| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4572954 | 15 (0.650) | 4 (0.180) | 4/256 | NT | 19.4% | intergenic (‑89/+112) | hsdM/hsdR | DNA methyltransferase M/pseudogene, premature stop codon, host restriction; endonuclease R |
| ? | CP009273 | = 4573041 | 19 (0.860) | intergenic (‑176/+25) | hsdM/hsdR | DNA methyltransferase M/pseudogene, premature stop codon, host restriction; endonuclease R | |||||
TGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGTAAATTAAGCAGCGGCCCAAATTCATCGAGCCGCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGCCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCAGATATAATCGCTGA > CP009273/4572820‑4573097 | tGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTGGTTGGTCAGTGTGAGTGCCGTAGAGTAAGCAGCGGCCCAAATTGATCGAGGCGCAGAAGAAGAAATGGCCGAGGGGAAGAGACACAAACTCATTCAGGTGGCagccag > 1:374465/1‑140 (MQ=255) cacagcttccacagcttcGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGTAAATTAAGCAGCGGCCCAAATTCATCGAGCCGCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCATTCAGGctgcctctgcgttgg > 1:369525‑M1/1‑130 (MQ=255) aTCGTTATTGTTCATTGTGAGTTCCGTAAATTAAGCAGCGGCCCAAATTCATCGAGCCGCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTAc > 2:50297/1‑145 (MQ=255) gTAAATTAAGCAGCGGCCCAAATTCATCGAGCCGCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGacaga > 1:246728/1‑141 (MQ=255) aaaTTAAGCAGCGGCCCAAATTCATCGAGCCGCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAgc < 2:284790/145‑1 (MQ=255) gCCCAAATTCATCGAGCCGCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGCCAACGCag < 2:272552/145‑1 (MQ=255) cccAAATTCATCGAGCCGCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAACCATTCAGGTTCCATCAAGGCGGCAAGTGAGTGAATCCCCAGGAGCGTACAGAAGTACGTGACCGGGGAGAACCAGCGCAGCCAACGCaga > 2:363620/1‑145 (MQ=255) cAACTTCATCGAGCCGCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGCCAACGCAGAgg < 1:309708/145‑1 (MQ=255) cATCGAGCCGCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCCAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACCTGACCGGGGTGAACGAGCGCAGCCAACCCACAGCCAGccc < 1:148567‑M2/145‑4 (MQ=255) tCGAGCCGCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCATTCAGGctgcctctgcgttggctgcgctcgttcaccccggtcacgtacttctgtacgctcccggggattcactcacttgccgccttgatgcaacctga < 2:369525‑M1/145‑93 (MQ=255) gAGCCGCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCATTCAGGctgcctctgcgttggctgcgctcgttcaccccggtcacgttcttctgtacgctcccggggattcactcacctgccgccttgatgcaacctgaat < 2:233382‑M1/145‑95 (MQ=255) agaagaagaAATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGCCAACGCAGAGGCAGCCTGAAGGATGAAg < 2:136020/145‑1 (MQ=255) gaagaagaaAGTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGCCAACGCAGAGGCAGCCTGAAGGATGAAgt < 1:94876/145‑1 (MQ=255) agaagaaATTGCCGAGGGTAATATACACAAAATCATTCAGGctgcctctgcgttggctgcgctcgttcaccccggtcacgtacttctgtacgctcccggggattcactcacttgccgccttgatgcaacctgaatgattttgtgt < 1:172136‑M1/145‑105 (MQ=255) gaagaaATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGCCAACGCAGAGGCAGCCTGAAGGATGATGTGta > 2:235406/1‑145 (MQ=255) gaagaaATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGAAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGCCAACGCAGAGGCAGCCTGAAGGATGAAGTGta < 2:13271/145‑1 (MQ=255) agaaATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGCCAACGCAGAGGCAGCCTGAAGGATGAAGTGtata < 2:28886/145‑1 (MQ=255) gaaGTTGCCGAGGGTAATATACACAAACTCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGCCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATAc < 1:33229/145‑1 (MQ=255) ttGCGGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGCCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACgtgt < 1:389379/145‑1 (MQ=255) ggTAATATACACAAAATCATTCAGGTTGCAGCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGCCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAg < 2:114093/145‑1 (MQ=255) atatACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGCCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCg > 1:396448/1‑145 (MQ=255) acacAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGCCAACGCAGAGGCAGcctgaatgattttgtgtatattaccctcggcaatttcttct < 1:172136‑M2/145‑42 (MQ=255) aTTCAGGTTGCATCAAGGCGGCAGGTGAGTGAATCCCCGGGAGCGTACAGAAGAACGTGACCGGGGTGAACGAGCGCAGCCAACGCAGAGGCAGcctgaatgattttgtgtatattaccctcggcaatttcttcttctgcggctc < 2:233382‑M2/145‑52 (MQ=255) tCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGCCAACGCAGAGGCAGcctgaatgattttgtgtatattaccctcggcaatttcttcttctgcggctcga < 2:369525‑M2/145‑54 (MQ=255) gggctggctgtgggttggctgcgctcgttcaccccggtcaggtacttctgtacgctcccggggattcactcacttgccgcctggatgcaacctgaatgattttgtgtatattaccctcggcaatttcttcttctgcggctcgatg < 1:148567‑M1/144‑143 (MQ=255) ggTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGCCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCAGATATAATCGCTGa < 2:108794/145‑1 (MQ=255) | TGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGTAAATTAAGCAGCGGCCCAAATTCATCGAGCCGCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGCCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCAGATATAATCGCTGA > CP009273/4572820‑4573097 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |