| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | CP009273 | 2,400,257 | IS5 (+) +4 bp | intergenic (‑137/‑780) | lrhA ← / → alaA | transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2282398 = | NA (NA) | 149 (1.740) | 89/296 | 0.0 | 100% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 2400257 = | 0 (0.000) | intergenic (‑137/‑783) | lrhA/alaA | transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2 | |||||
| * | ? | CP009273 | = 2283592 | NA (NA) | 94 (1.100) | 67/296 | 0.2 | 100% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | CP009273 | = 2400260 | 0 (0.000) | intergenic (‑140/‑780) | lrhA/alaA | transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2 | |||||
CAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAG > CP009273/2282250‑2282540 | cAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTG‑ATGCCAATGCTATGGGTGAATATaag < 2:943756/149‑1 (MQ=255)cAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTG‑ATGCCAATGCTATGGGTGAATATaag < 2:557992/149‑1 (MQ=255) aaaTTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTG‑ATGCCAATGCTATGGGTGAATATaagg > 2:162797/1‑149 (MQ=255) ttttATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTTGCGGTCCCATAAACCAGCTAGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTg < 1:948700/149‑1 (MQ=255) tttATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGc < 2:342441/149‑1 (MQ=255) tttATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGc > 2:1072470/1‑149 (MQ=255) ttATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGCg < 1:1310924/149‑1 (MQ=255) tataTGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGa < 1:1286582/149‑1 (MQ=255) atatGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGaa < 1:284850/149‑1 (MQ=255) tGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCg > 2:979637/1‑149 (MQ=255) gTTTTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTG‑ATGCCAATGCTATGGGTGAAGATAAGGAAGGTGCGAATAAGCgg < 2:956201/149‑1 (MQ=255) gTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCgg < 2:482438/149‑1 (MQ=255) ttCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACGGTTG‑ATGCCAATGCTAGGGGGGAAGATAAGGAAGGTGCGAATACGCggg > 1:950987/1‑149 (MQ=255) ttCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCggg > 1:1054255/1‑149 (MQ=255) ccccGCCAGGCTTGATTTTCGTATGATTGGCGGTCCCATAAACCACCTGGATCTCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGa < 2:117113/147‑1 (MQ=255) tcCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACCGTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGaa > 2:605567/1‑149 (MQ=255) tcCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGaa > 1:1292316/1‑149 (MQ=255) cGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAAt < 1:1259868/149‑1 (MQ=255) cGCCAGGATTGATCTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTG‑ATGCCCATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGACAt > 2:132632/1‑149 (MQ=255) gCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTG‑ATGCCAATGCTATGGGGGAATATAAGGAAGGTGCGAATAAGCGGGGAAAtt > 1:1335340/1‑149 (MQ=255) ccAGCATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCACCAGTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAAttc < 2:336950/149‑1 (MQ=255) gattgattTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATtcttct > 1:1171755/1‑149 (MQ=255) ttgattTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCg < 2:750970/149‑1 (MQ=255) tgattTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCgg < 2:1110484/149‑1 (MQ=255) tttCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGa > 2:1222204/1‑149 (MQ=255) gTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTGCCAGGACAACACCATCAACGGTCTCACCATACTCAACAGTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCa < 1:633636/149‑1 (MQ=255) cGGCCCCATAAACCACCCGGATATCCTTTTCCTGGACAACACCATCAACTGTCTGACCATACTCAACAGTTG‑CTGCCAACGCGACGGCTGAACATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttcat < 2:772553/149‑1 (MQ=25) tgTCCCATCATCCAGCTGCCTATCTTTTTCCCGGACAACTCCACCAGCTGTCTCACCATACTCAGCAGGTT‑ATGCCCATTCTCTTGGTGTATATAAGGAAGGTGCGTATAAGCGGTGAAATTCTTCTCGGCTGACTCAGtcatttcatt < 2:431058/148‑1 (MQ=18) tCCCATAAACCAGCTGGATATCTTTTTCCGGGACAACACCATCAACTGTCTCACCATACTCAACAGTTG‑ATGCCAATGCTATGGGTGAATATAGGGAAGGAGCGAATAAGCGGGGAAATCCTTCTCGGCTGACTCAGTgatgtcatttg > 1:1186562/1‑148 (MQ=255) tAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCAt < 1:1184611/149‑1 (MQ=255) aaaCCAGCTGGATATCTTTTTCCATGACAACACCATCAACTGTCTCACCATACTCAACAGTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATACGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATg < 2:1182478/149‑1 (MQ=255) cAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTg < 1:551395/149‑1 (MQ=255) cAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTg < 1:961110/149‑1 (MQ=255) gCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAg < 1:435813/149‑1 (MQ=255) tttttCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATACGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAtttttt < 2:1271626/149‑1 (MQ=255) ccAGGACGACACCATCAACTGTCTCCCCATACTCGACAGTTG‑ATGCGGTTGCTATGGGTGAATATAGGGAATGTGCGAATAGGCGGGGAAATTCTTCTCGGCGGACTCAGTCAGTTCATTTCTTCATGTTTGAGCCGATTTTTTCTccc < 2:1164417/149‑1 (MQ=18) aGGACAACACCATCAACTGTCTCACCATACTCAACAGTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGt > 1:328776/1‑149 (MQ=255) gACAACACCATCAACTGTCTCACCATACTCAACAGTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTaa > 1:33956/1‑149 (MQ=255) aacaCCATCAACTGTCTCACCATCCTTGTC‑GTTGCATGCCAGTGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATTTTTGAGTCTATTTTTTCTCCCGTATATg < 2:292537/149‑1 (MQ=17) aacaCCATCAACTGTCTCACCATACTCAACAGTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGGTTTTTTCTCCCGTAAATg > 1:28921/1‑149 (MQ=255) aacaCCATCAACTGTCTCACCATACTCAACAGTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATg < 1:1222204/149‑1 (MQ=255) aacaCCATCAACTCTCTCACCATACTCAACAGTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATg > 1:952662/1‑149 (MQ=255) acacCTTCAACTGCCTCACCATACTCAACAGTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGc < 1:1353290/149‑1 (MQ=255) cAACTGTCTCACCATACTCAACAGTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAAt < 1:979637/149‑1 (MQ=255) aCTGTCTCACCATACTCAACAGTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCa < 1:1072470/149‑1 (MQ=255) ctcACCATCCACACTAGTTG‑ATGCGAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGAGAATGTCTTCTCGGCTGACTCACTCACTTCATTTCTTCATGTCTGAGCCGATTTTTTCGCCCGTAAATGCCTTGAATCAGCCTa < 2:1299618/149‑1 (MQ=17) cACCATACTCAACCGTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCCGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTAtt < 2:202534/149‑1 (MQ=255) cACCATACTCAACAGTTG‑ATGCCAATGCTATGGGTGAATAGAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTAtt < 2:944595/149‑1 (MQ=255) cATACTCAACAGTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAg > 2:88429/1‑149 (MQ=255) cAACAGTTG‑ATGCCAATGCTATGGGTGAATATACGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGtt > 1:1021946/1‑149 (MQ=255) cAACAGTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGtt > 2:1270835/1‑149 (MQ=255) aaCAGTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATTCCTTGAATCAGCCTATTTAGACCGttt > 2:762265/1‑149 (MQ=255) cAGTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttct < 1:436285/149‑1 (MQ=255) aGTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttctt > 2:410194/1‑149 (MQ=255) gTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttcttc < 1:278968/149‑1 (MQ=255) gTTG‑ATGCCAATGCTATGGGGGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttcttc < 2:972945/149‑1 (MQ=255) ttG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCg > 1:686875/1‑149 (MQ=255) gCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCTGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAACCAGCCTATTTAGACCGTTCCTGCCCCAtt > 2:373101/1‑149 (MQ=14) cAATGCCATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCGGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTa > 2:798285/1‑149 (MQ=255) cgctcagggTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCCCGGCTGACTCAGTCATTTCAGTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAgg < 2:1245355/143‑1 (MQ=255) aTGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTGTTTAGACCGTTTCTTCGCCATTTAAGGCGtt < 2:23649/149‑1 (MQ=255) aTGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCCTTTAAGGCGtt > 1:229252/1‑149 (MQ=38) gggTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTACATGTCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTAt < 2:1273075/149‑1 (MQ=255) gTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTCCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATcc < 1:162972/149‑1 (MQ=25) gAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCGCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATcccc < 1:132632/149‑1 (MQ=18) atatAAGGAAGGTGCGAATAAGCGGGAAAATTCTTCTAGGCTGACTCAGTCATTTCATTTCTTCATTTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCCTTTAAGGCGTTATCCCCAg > 1:971881/1‑149 (MQ=255) | CAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTG‑ATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAG > CP009273/2282250‑2282540 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |