mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.32.0b
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 59 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4034046 | 52 (0.850) | 8 (0.130) +ATGT |
5/284 | 8.3 | 12.0% | intergenic (+50/+220) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | CP009273 | = 4203083 | 69 (1.130) | noncoding (116/120 nt) | rrfE | 5S ribosomal RNA of rrnE operon | |||||
| * | ? | CP009273 | = 3940175 | 9 (0.150) | 8 (0.130) +ACAT |
5/284 | 8.3 | 21.2% | noncoding (116/120 nt) | rrfC | 5S ribosomal RNA of rrnC operon |
| ? | CP009273 | = 4034046 | 52 (0.850) | intergenic (+50/+220) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | CP009273 | 3417031 = | NA (NA) | 8 (0.130) +ACAT |
5/284 | 8.3 | 13.7% | noncoding (116/120 nt) | rrfD | 5S ribosomal RNA of rrnD operon |
| ? | CP009273 | = 4034046 | 52 (0.850) | intergenic (+50/+220) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | CP009273 | = 592561 | 60 (0.980) | 5 (0.090) +ATCCATTTATTATCTT |
4/260 | 8.3 | 8.2% | intergenic (+132/‑26) | cusC/cusF | copper/silver efflux system, outer membrane component/periplasmic copper‑ and silver‑binding protein |
| ? | CP009273 | = 798943 | 65 (1.060) | intergenic (+167/‑16) | ybhI/ybhJ | putative transporter/putative hydratase | |||||
| * | ? | CP009273 | = 798928 | 55 (0.900) | 4 (0.070) | 4/274 | 8.7 | 6.7% | intergenic (+152/‑31) | ybhI/ybhJ | putative transporter/putative hydratase |
| ? | CP009273 | = 798934 | 60 (1.040) | intergenic (+158/‑25) | ybhI/ybhJ | putative transporter/putative hydratase | |||||
| * | ? | CP009273 | 284116 = | 101 (1.650) | 5 (0.090) | 4/274 | 8.7 | 4.8% | coding (758/759 nt) | yagI | CP4‑6 prophage; putative DNA‑binding transcriptional regulator |
| ? | CP009273 | 284160 = | 104 (1.810) | coding (714/759 nt) | yagI | CP4‑6 prophage; putative DNA‑binding transcriptional regulator | |||||
| * | ? | CP009273 | 4364315 = | NA (NA) | 4 (0.070) | 4/278 | 8.8 | NA | noncoding (1/99 nt) | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | 4364345 = | NA (NA) | noncoding (31/99 nt) | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | 4206191 = | 76 (1.240) | 4 (0.070) | 4/280 | 8.8 | 5.3% | coding (786/1602 nt) | aceB | malate synthase A |
| ? | CP009273 | 4206206 = | 71 (1.210) | coding (801/1602 nt) | aceB | malate synthase A | |||||
| * | ? | CP009273 | 3661115 = | 88 (1.440) | 4 (0.070) | 4/278 | 8.8 | 5.0% | intergenic (‑175/+36) | gadA/yhjA | glutamate decarboxylase A, PLP‑dependent/putative cytochrome C peroxidase |
| ? | CP009273 | 3661143 = | 69 (1.180) | intergenic (‑203/+8) | gadA/yhjA | glutamate decarboxylase A, PLP‑dependent/putative cytochrome C peroxidase | |||||
| * | ? | CP009273 | = 2704632 | 65 (1.060) | 4 (0.070) | 4/280 | 8.8 | 5.7% | coding (854/1623 nt) | nadB | quinolinate synthase, L‑aspartate oxidase (B protein) subunit |
| ? | CP009273 | = 2704659 | 69 (1.170) | coding (881/1623 nt) | nadB | quinolinate synthase, L‑aspartate oxidase (B protein) subunit | |||||