New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	376748 =	NA (NA)	14 (0.130)	10/274	13.0	NA	intergenic (‑33/‑59)	yaiX/insC1	pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase/IS2 repressor TnpA
	?	CP009273	376768 =	NA (NA)					intergenic (‑53/‑39)	yaiX/insC1	pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase/IS2 repressor TnpA
Rejected: Coverage evenness skew score above cutoff.

ATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAA  >  CP009273/376602‑376859                                                                                                                                                   |                                                                                                                aTTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAatat                                                                                                               <  2:1331060/149‑1 (MQ=255)  ttGCCGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATc                                                                                                              <  2:273002/149‑1 (MQ=255)    gCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAGAACCAATTTTTACGCCATTACTGATTATTGTGCCAGGACGAATAAACACATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAat                                                                                                                 >  1:1428054/1‑144 (MQ=255)    gCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCAc                                                                                                            >  2:1562062/1‑149 (MQ=255)         ccAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTGGGTGGCTACACCACTTATGACTCTAGGCCTAAGTGTTGTGCCAGGACGAATAAACGCATCATTACTAGACTGGCCCCCTGAATCTCCAGACAACCCATATCAc                                                                                                            >  1:1288986/1‑144 (MQ=25)            aTCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAACCCAATTTTTACGACATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACtaa                                                                                                         >  1:82411/1‑142 (MQ=255)               gTTGGTTCCGCTTAAATAACCGCATTTTTAATCTCGGTGGCAAAGCCAAGTTTTACGCCAGTGCTGATTATTGTGCCAGGACGAAAAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGGCAACCAATATCACTTAAAt                                                                                                      <  1:1283957/144‑1 (MQ=38)                  gCTTCCGTTTCAATAATCGCATTTTGAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATa                                                                                              <  2:272108/149‑1 (MQ=255)                   cTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGt                                                                                                  >  1:906882/1‑144 (MQ=255)                    ttCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGt                                                                                            >  2:948726/1‑149 (MQ=255)                    ttCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGt                                                                                            >  2:1043653/1‑149 (MQ=255)                     tCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGCCGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc                                                                                           >  2:1799140/1‑149 (MQ=255)                      ccGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGAt                                                                                               >  1:1105060/1‑144 (MQ=255)                        gCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCAATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACAAGACTGGCCCCCTGAATCACCAGACAACCAATATCACTTAAATAAATGATAg                                                                                             >  1:214971/1‑144 (MQ=255)                         cTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTaa                                                                                       <  2:1565067/149‑1 (MQ=255)                          ttCAATAACCGCATTTTTAATCTCGGTGGCAAAATCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAAt                                                                                      <  2:1591558/149‑1 (MQ=255)                          ttCAATAACCGCATTTTTAAGCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGGGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAAt                                                                                      <  2:419066/149‑1 (MQ=255)                           tCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATa                                                                                     >  2:701879/1‑149 (MQ=255)                            ccaTAACCGCAGTTCTAATCGCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCtt                                                                                         <  1:958284/142‑1 (MQ=255)                             aaTAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTa                                                                                        >  1:1818795/1‑144 (MQ=255)                                acccGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATa                                                                                     <  1:1481229/142‑1 (MQ=255)                                     cATTTCTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTa                                                                           <  2:1730200/149‑1 (MQ=255)                                       tttttAATCTCGGTGGCCAACGCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATCCTAGttt                                                                              >  1:1382230/1‑144 (MQ=255)                                         tttAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGAAAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGttttt                                                                            >  1:1504866/1‑144 (MQ=255)                                         cttAAACTCGGTGGCAAAACCAGTTTGTACGCCATTGCTGATGATTGTGCCAGGACGATTAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGttttt                                                                            <  1:1322863/143‑1 (MQ=25)                                                  ggTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTgg                                                              >  2:1945016/1‑149 (MQ=255)                                                   gTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGACCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTACACTAGTCa                                                                  >  1:745045/1‑144 (MQ=255)                                                    tGGCAAAACCAATTTTTACGCCATCGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGgag                                                            <  2:535709/149‑1 (MQ=255)                                                     ggcctaaCCACTTTCTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCGAGACAACCAATATCACTTAAAAACGCGATAATCTTTTTACTAGTTTTTAGACTAGTCAtt                                                                <  1:1299670/139‑1 (MQ=21)                                                     cgCAAAACCAACTTTTACGCCATTGCTGATTATTGTGCCAGGACTAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGAGAGTCTTAATACTAGTTTTTAGACTAGTCAtt                                                                <  1:176400/143‑1 (MQ=255)                                                      gCAAAACCAATTTTGACGCCATTGCTGATTAGTGTGCCAGGACGAATAAACGCATAATTACGAGGCTGGCGCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGaa                                                          <  2:1387819/149‑1 (MQ=21)                                                       cAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATTACCTAAATAAGTGATAGGCTTAATACTAGTTTTTAGACTAGTCATTgg                                                              >  1:827800/1‑144 (MQ=255)                                                        aaaaCCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGga                                                             <  1:1443952/144‑1 (MQ=255)                                                        aaaaCCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGcaca                                                        >  2:1447152/1‑149 (MQ=255)                                                        aaaaCCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACa                                                        >  2:213687/1‑149 (MQ=255)                                                        aaaaCCAATTTTTACGCCATTGCTGATTATTGTGCCAAGAAGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGga                                                             <  1:731023/144‑1 (MQ=255)                                                        aaaaCCAATTTTGACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGga                                                             <  1:731019/144‑1 (MQ=255)                                                         aaaCCAATTTTTACGCCATTGCTGATTGTTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATCGTAGGTTTTAGATTacaaacaggcg                                                            >  1:1156063/1‑134 (MQ=21)                                                          aaCCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATGAGTGATAGTCTTAATACTTGTGTTTAGACTAGTCATTGGAGAACAga                                                      <  2:1112300/149‑1 (MQ=255)                                                           aCCAATTTTTACGCCATTTCTGATTATTGTGCCAGGACAAATAAACGCAGAATTACTAGACTGGCCCCCTAAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGTAGaa                                                          <  1:206400/144‑1 (MQ=21)                                                             cAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACa                                                        >  1:1236680/1‑144 (MQ=255)                                                                  tttACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGAtgattgat                                              <  2:1684096/149‑1 (MQ=255)                                                                      cGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCt                                          >  2:607020/1‑149 (MQ=255)                                                                        ccATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTa                                        >  2:1901348/1‑149 (MQ=255)                                                                         cATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAg                                       <  2:1953080/149‑1 (MQ=255)                                                                                gATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGga                                >  2:1588858/1‑149 (MQ=255)                                                                                 attattGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGGTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGgag                               >  2:1769775/1‑149 (MQ=255)                                                                                   tattGTGCCAGGACGAATAAACGCATAATCACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGaa                             <  2:363026/149‑1 (MQ=255)                                                                                     ttGTGCCAGGATGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAAc                           <  2:821224/149‑1 (MQ=255)                                                                                     ttGTGCCAGGACCAATAAACGCATAACTACTAGACCAGCCCCCCGAATCTCCAGACAACCAAGATCACATAAATAACTGATAGTCTAAATACTAGTTTTTAGACTAGTCATTCGACAAAAGACGATCGATCTCCTAAGGCCGga                                <  1:1404072/144‑1 (MQ=14)                                                                                      tgtgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACg                          >  2:224924/1‑149 (MQ=255)                                                                                       gtgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTGGACTAGTCGTTGGAGAACAGATGGTTGATGTCTGAGGTCCGGAGAAACGc                         >  2:907909/1‑149 (MQ=17)                                                                                          ccAGGACCAAAAAACCCATCATTACTAGACCGGCCCCCTGAATCACCAGACAACCAATATCACCTAAATAAGTGATAGTCTTAATACCAGCTTTTAGACTAGTCATTCGAGAACAGATAATTGATGTCTCAGGGCCGGAGAAAc                           <  1:972993/144‑1 (MQ=11)                                                                                            aGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGc                         >  1:1526161/1‑144 (MQ=255)                                                                                             ggACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCa                        >  1:906897/1‑144 (MQ=255)                                                                                             ggACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCa                        >  1:1082477/1‑144 (MQ=255)                                                                                              gACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGcggccggc                  >  2:287465/1‑149 (MQ=255)                                                                                                 gAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGCACAGATGATTGATGTCTTAGGGCCGGAGAAACGGAGACGGCGTa               >  2:560839/1‑149 (MQ=255)                                                                                                  aaTAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTAc              <  2:630638/149‑1 (MQ=255)                                                                                                   aTAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTAcc             >  2:1770284/1‑149 (MQ=40)                                                                                                    tAAACGCATCATTACTAGACTGGCTCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACca            <  2:1239050/149‑1 (MQ=255)                                                                                                      aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACcaca          <  2:514046/149‑1 (MQ=38)                                                                                                       aCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTAc              >  1:1394362/1‑144 (MQ=38)                                                                                                            tAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCTGAGAAAGGCAGACGGCGGACcacca         >  1:363255/1‑142 (MQ=255)                                                                                                             aaTTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAACCGCAGACGGCGTACCACACAGGaaa   <  2:999612/149‑1 (MQ=17)                                                                                                              aTTACTCGACTGCTCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGCGAAACGCAGACGGCGTACcacaccg       >  1:1118500/1‑142 (MQ=255)                                                                                                              aTTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGaaaa  <  2:1625228/149‑1 (MQ=32)                                                                                                                                                   |                                                                                                                ATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAA  >  CP009273/376602‑376859

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.