New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1045234 =	87 (1.070)	65 (0.800)	56/296	0.5	58.3%	intergenic (‑34/‑55)	gfcA/insA	O‑antigen capsule production threonine‑rich inner membrane protein/IS1 repressor TnpA
	?	CP009273	= 1973123	6 (0.070)					intergenic (‑669/‑111)	flhD/uspC	flagellar class II regulon transcriptional activator, with FlhC/universal stress protein

GCGCTGATGTCCGGCAGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/1045375‑1045234 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTGTACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAACATTAAGTTGATTGTTGCCTTTCTTT  <  CP009273/1973123‑1972979                                                                                                                                                                                                                                                                                                 GCGCTGATGTCCGGCAGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGAT                                                                                                                                            >  2:1216594/1‑149  CGCTGATGTCCGGCAGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATA                                                                                                                                           <  1:52688/149‑1   cCTGAGGTCCGGCAGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAA                                                                                                                                          <  2:1102649/148‑1          TCCGGCAGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCA                                                                                                                                   >  2:1081062/1‑149             GGCAGTGCTTTTGCCGTTTCGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGCTAGAAACAGAAGCCACTGGAGAACCCCAAAAACACCATCATACACTAAATCAGTAAGTTGGAAGCATCACCTAAAGATAATCAATCAATC                                                                                                                                >  2:857567/1‑149              GCAGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCA                                                                                                                               <  1:1205059/149‑1              GCAGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCA                                                                                                                               >  1:415327/1‑149                 GTGCGTTTGCCGTTACGCACCACCCCGGCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACTCTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTC                                                                                                                            <  2:875283/149‑1                  TGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCC                                                                                                                           >  1:702226/1‑149                      TTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAACCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTACTCAATCCCTCACGGT                                                                                                                       >  2:1173109/1‑149                       aacccggTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGCGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTG                                                                                                                      >  2:744191/8‑149                       TTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTG                                                                                                                      >  2:1065277/1‑149                                CGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAA                                                                                                             <  1:130550/149‑1                                CGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAA                                                                                                             <  1:416787/149‑1                                    CCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTC                                                                                                         >  2:872782/1‑149                                     CACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCA                                                                                                        <  1:1297770/149‑1                                      ACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAA                                                                                                       <  1:823498/149‑1                                       CCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAA                                                                                                      <  1:617991/149‑1                                          cggCAGAAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGT                                                                                                   <  2:1041953/146‑1                                            TCAGCAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAA                                                                                                 <  2:197134/149‑1                                              AGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGGGATCATATAATTTCAAATGTAATT                                                                                               >  2:478909/1‑149                                                TAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTAT                                                                                             >  2:1171914/1‑149                                                 AGCTGATCAGGAGGGACAGCGGATAGAATCAGAAGCAACTGGGGAACCTCAAAAACAGCGTCGTACACTAAATCAGTAAGTTGGCAGCGTCGCCTAAAGATAATTAATCAAGCACTCCCGGTGATCATATAATTTCAAATGTAATTATA                                                                                            <  2:859880/149‑1                                                   CTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCACCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAG                                                                                          >  2:116981/1‑149                                                     GAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATAATAAaca                                                                                        <  2:496649/149‑4                                                      AACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAA                                                                                       >  1:640865/1‑149                                                         AGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATA                                                                                    <  2:415327/149‑1                                                           GAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGT                                                                                  >  1:229052/1‑149                                                               GACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTGTAC                                                                              <  2:601134/149‑1                                                                 CAGCTGATAGAAACAGAATCCACGTGGGAACCTCAAAAACACCATCATACACTGAATCAGTAAGTTGGCAGCATCATCTACAGATAATTAATCAATCACTCCCGGTGATCATATTATTTCAAATGTAATTATAAGAAAATAGTGTACTG                                                                            <  2:907251/149‑1                                                                  AGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTGTACTGA                                                                           >  2:1257793/1‑149                                                                  AGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTGTACTGA                                                                           >  1:216149/1‑149                                                                  AGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTGTACTGA                                                                           >  1:216141/1‑149                                                                     TGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTGTACTGATTC                                                                        >  2:1156680/1‑149                                                                       gTAGAAACAGAAGCCACTGGAGAACATCAAAAATACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTGTACTGATTCTC                                                                      >  2:484275/2‑149                                                                        TAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTGTACTGATTCTCC                                                                     <  1:108478/149‑1                                                                          GAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTGTACTGATTCTCCGC                                                                   <  1:872081/149‑1                                                                           AAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAAATATAAGAACATAGTGTACTGATTCTCCACA                                                                  >  2:442359/1‑149                                                                           AAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGACCATATAATTTCAAATGTAATTATAAGAAAATAGTGTACTGATTCTCCGCA                                                                  >  2:442338/1‑149                                                                            AACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTGTACTGATTTTCCGCAT                                                                 >  2:571974/1‑149                                                                                   GCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTGTACTGATTCTCCGCATTAAACAA                                                          >  2:1221551/1‑149                                                                                      ACTGGCAAACCTCACAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGATAATAGTGTACTGATTCACCTCATTAAGAAAGTG                                                       >  2:684405/1‑149                                                                                              ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTGTACTGATTCTCCGCCTTAAAAAAGTGGTTAATAT                                               >  1:518921/1‑149                                                                                               CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTGTACTGATTCTCCGCATTAAACAAGTGGTTAATATA                                              >  2:920609/1‑149                                                                                                CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTGTACTGATTCTCCGCATTAAACAAGTGGTTAATATAT                                             <  2:59254/149‑1                                                                                                 TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTGTACTGATTCTCCGCATTAAACAAGTGGTTAATATATG                                            >  2:1070418/1‑149                                                                                                 TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTGTACTGATTCTCCGCATTAAACAAGTGGTTAATATATG                                            >  2:984447/1‑149                                                                                                 TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTGTACTGATTCTCCGCATTAAACAAGTGGTTAATATATG                                            >  1:930291/1‑149                                                                                                         ACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTGTACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTCAAACAT                                    >  1:845172/1‑149                                                                                                           CATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTGTACTGATTCTCCGCATTAAAAAAGTGGTTAATATATGTAAAACATTT                                  >  2:455250/1‑149                                                                                                             TCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTGTACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCA                                <  1:1028350/149‑1                                                                                                              CATACACCAAATCATCAAGTTGGCAGCATCACCCAAATATAACTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTGTACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCAT                               <  1:434125/149‑1                                                                                                                   ACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTGTACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAACA                          >  1:623238/1‑149                                                                                                                    CTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTGTACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAACAT                         >  1:341763/1‑149                                                                                                                      AAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTGTACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAACATTA                       >  2:968627/1‑149                                                                                                                       AATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTGTACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCGTTAACATTAA                      >  1:1161453/1‑149                                                                                                                        ATCAGTAAGTTGGCAGCATCACCTAAAGATAATCAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTGTACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAACATTAAG                     <  1:1207273/149‑1                                                                                                                            GTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATACTTTCAAATGTAATTATAAGAAAATAGTGTACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTAATTAACTTTAAGTTGA                 >  1:829394/1‑149                                                                                                                              AAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTGTACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAACATTAAGTTGATT               <  1:1081062/149‑1                                                                                                                               AGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATATAATTATAAGAAAATAGTGTACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAACATTAAGTTGATTG              >  2:65595/1‑149                                                                                                                                 TTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTGTACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAACAATAAGTTGATTGTT            >  1:340877/1‑149                                                                                                                                 TTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTGTACTGACAATTGTCATTAAACAAGTTGTTATTATATGTAAAACATTTCATTAACATTAAGTTGATTGTT            <  1:844239/149‑1                                                                                                                                      AGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTGTACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAACATTAAGTTGATTGTTGCCTT       >  1:760303/1‑149                                                                                                                                         ATCACCTAAAGATAATTAATCAATCACTCCCGGTGTTCATATAATTTCAAATGTAATTATAAGAAAATAGTGTACTGATTCTCCGCATTAAACAAGTGGTTCATATATGTAAAACATTTCATTCACATTAAGTTGATTGTTGCCTTTCT    <  1:744191/149‑1                                                                                                                                           CACCTAAAGATAATTACTCAATCACCACCGGTGAGCATATAATTTCAAATGTAATTATAAGAAAATAGTGTACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAACATTAAGTTGATTGTTGCCTTTCTTT  <  2:1296470/149‑1                                                                                                                                                                                                                                                                                                 GCGCTGATGTCCGGCAGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/1045375‑1045234 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTGTACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAACATTAAGTTGATTGTTGCCTTTCTTT  <  CP009273/1973123‑1972979

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.