| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 314453 = | 45 (0.950) | 49 (1.070) +TC |
27/98 | NT | 69.4% | coding (873/888 nt) | eaeH | attaching and effacing protein, pathogenesis factor |
| ? | W3110S.gb | 3932930 = | 0 (0.000) | coding (219/1608 nt) | dppA | dipeptide transporter | |||||
AGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/314511‑314453‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCG > W3110S.gb/3932930‑3932998 || AGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCG > 1:3236136/1‑71AGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCG > 1:1526869/1‑71 GTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGG > 1:1245950/1‑71 CACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGC > 1:2677208/1‑71 CACCTCTGACTGAGAGTTTACTCACTTAGCCGCCTGTCCACTATTGCTGGGTAAGATCAGTTATCCCGGGC > 1:1121118/1‑71 CTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCTGGCCTCGC > 1:729356/1‑71 ACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTG < 1:1661462/70‑1 ACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTG > 1:4190188/1‑70 CTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAA < 1:381988/71‑1 TGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAA < 1:3881480/70‑1 TGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAA > 1:4403739/1‑70 AGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTG < 1:3952157/71‑1 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGG > 1:4039231/1‑69 CTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGTGAAG < 1:2801800/70‑1 CTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAG < 1:2283644/70‑1 CTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAG < 1:648467/70‑1 CTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCACGGGCCTCGCTGAAAAGTGGGAAG < 1:2694286/70‑1 ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAG > 1:516898/1‑71 ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAG > 1:2204477/1‑71 ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAG > 1:1707465/1‑71 ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAG > 1:721801/1‑71 ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAG > 1:3966334/1‑71 ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTC < 1:2758844/69‑1 ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTC > 1:4067746/1‑51 TAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCG > 1:4006587/1‑70 TAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCG > 1:504197/1‑70 AGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCG > 1:1779970/1‑69 AGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCG < 1:2558629/69‑1 AGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCG < 1:3552317/69‑1 CGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGA < 1:949368/56‑1 TGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAA < 1:3055941/47‑1 GTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTA > 1:3990415/1‑70 TCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGACAGCGAAGACGGTAA > 1:546356/1‑70 CCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAG < 1:3441877/53‑1 ACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACC < 1:1985546/71‑1 ACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACC < 1:2454546/71‑1 CTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACC > 1:561864/1‑70 CTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACC < 1:2606860/70‑1 CTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTG < 1:370702/45‑1 CTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTG < 1:1205657/45‑1 CTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAA < 1:3250785/40‑1 TATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTA > 1:4351497/1‑71 TATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTA > 1:2712293/1‑71 ATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTA > 1:3177078/1‑70 ATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTA > 1:1024225/1‑70 TTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATA > 1:1479071/1‑71 TTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTA > 1:4432105/1‑69 TTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCA < 1:3751767/50‑1 GGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCC < 1:4050844/71‑1 TAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTA > 1:117719/1‑61 TCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCG > 1:2077363/1‑71 TCAGTGATCCCGGGCCTCGCT‑AAAAGTGGGAAGTCAGCG < 1:297794/39‑1 || AGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/314511‑314453‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCG > W3110S.gb/3932930‑3932998 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |