New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb 1045138 =35 (0.740)15 (0.430)
+CAGTTTCTACACA		 3/76 NT 31.5% coding (1088/1140 nt) yccZ predicted exopolysaccharide export protein
?W3110S.gb = 1565896 53 (1.120)coding (1552/2400 nt) dos cAMP phosphodiesterase, heme‑regulated
Rejected: Coverage evenness skew score above cutoff.

ACCGACGATTTCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/1045152‑1045138
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATATTCGCAAGAA  <  W3110S.gb/1565896‑1565883
               |||||||||||||              
caCGACGATTTCCGGCAGTTTCTACACATATATTCGCAAGA   >  1:3709584/3‑41
  CGACGATTTCCGGCAGTTTCTACACATATATTCGCAAGA   >  1:1773850/1‑39
  CGACGATTTCCGGCAGTTTCTACACATATATTCGCAAGA   >  1:2413392/1‑39
  CGACGATTTCCGGCAGTTTCTACACATATATTCGCAAGA   >  1:2776170/1‑39
  CGACGATTTCCGGCAGTTTCTACACATATATTCGCAAGA   <  1:318617/39‑1
  CGACGATTTCCGGCAGTTTCTACACATATATTCGCAA     >  1:2900783/1‑37
  CGACGATTTCCGGCAGTTTCTACACATATATTCGCAA     >  1:3542270/1‑37
  CGACGATTTCCGGCAGTTTCTACACATATATTCGC       <  1:3511472/35‑1
  CGACGATTTCCGGCAGTTTCTACACATATATTCGC       <  1:717876/35‑1
    ACGATTTCCGGCAGTTTCTACACATATATTCGCAAGAt  >  1:2735956/1‑37
    ACGATTTCCGGCAGTTTCTACACATATATTCGCAAGAt  >  1:569581/1‑37
    ACGATTTCCGGCAGTTTCTACACATATATTCGCAAGAt  >  1:705792/1‑37
       ATTTCCGGCAGTTTCTACACATATATTCGCAAGAt  <  1:1336541/35‑2
       ATTTCCGGCAGTTTCTACACATATATTCGCAAGAt  <  1:1421085/35‑2
       ATTTCCGGCAGTTTCTACACATATATTCGCAAGAt  <  1:3962297/35‑2
               |||||||||||||              
ACCGACGATTTCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/1045152‑1045138
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATATTCGCAAGAA  <  W3110S.gb/1565896‑1565883

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.