| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 1435474 | NA (NA) | 5 (0.110) | 4/96 | NT | NA | intergenic (‑86/+231) | pinR/ynaE | predicted site‑specific recombinase/predicted DNA‑binding transcriptional regulator |
| ? | W3110S.gb | = 1435496 | NA (NA) | intergenic (‑108/+209) | pinR/ynaE | predicted site‑specific recombinase/predicted DNA‑binding transcriptional regulator | |||||
CGAAATTGGTGTTCATATCATAATGCATCTCAGAAAATAATTATGATTATTTTTGTGCATATTTGTATGTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/1435403‑1435474‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacGCATTCGTTTATTTTCGAACGTGTACATACAAATATGCACAAAAATAATCATAATTATTTTCTGAGATGC < W3110S.gb/1435496‑1435427 CGAAATTGGTGTTCATATCATAATGCATCTCAGAAAATAATTATGATTATTTTTGTGCATATTTGTATGTA > 1:3417434/1‑71CGAAATTGGTGTTCATATCATAATGCATCTCAGAAAATAATTATGATTATTTTTGTGCATATTTGTATGTA < 1:3750162/71‑1CGAAATTGGTGTTCATATCATAATGCATCTCAGAAAATAATTATGATTATTTTTGTGCATATTTGTATGTA > 1:2265229/1‑71CGAAATTGGTGTTCATATCATAATGCATCTCAGAAAATAATTATGATTATTTTTGTGCATATTTGTATGT < 1:2788482/70‑1CGAAATTGGTGTTCATATCATAATGCATCTCAGAAAATAATTATGATTATTTTTGTGCATATTTGTATGT < 1:3840818/70‑1 GAAATTGGTGTTCATATCATAATGCATCTCAGAAAATAATTATGATTATTTTTGTGCATATTTGTATGTAC < 1:2316662/71‑1 GGTGTTCATATCATAATGCATCTCAGAAAATAATTATGATTATTTTTGTGCATATTTGTATGTAgat > 1:4125359/1‑64 CATATCATAATGCATCTCAGAAAATAATTATGATTATTTTTGTGCATATTTGTATGTACGCATTCGTTTAT > 1:4265306/1‑71 TCATAATGCATCTCAGAAAATAATTATGATTATTTTTGTGCATATTTGTATGTAC < 1:2606642/55‑1 TCATAATGCATCTCAGAAAATAATTATGATTATTTTTGTGCATATTTGTATGTAC < 1:4167928/55‑1 TCATAATGCATCTCAGAAAATAATTATGATTATTTTTGTGCATATTTGTATGTAC < 1:2316109/55‑1 TCATAATGCATCTCAGAAAATAATTATGATTATTTTTGTGCATATTTGTATGT < 1:4381664/53‑1 TCATAATGCATCTAAGAAAATAATTATGATTATTTTTGTGCATATTTGTATGT < 1:3688544/53‑1 CATCTCAGAAAATAATTATGATTATTTTTGTGCATATTTGTATGTACGCATTCGTTTATTTTCGAACGTGT < 1:3653978/71‑1 CATCTCAGAAAATAATTATGATTATTTTTGTGCATATTTGTATGTACGCATTCGTTTATTTTCGAACGTG < 1:2163290/70‑1 AGAAAATAATTATGATTATTTTTGTGCATATTTGTATGTA > 1:2795532/1‑40 AATAATTATGATTATTTTTGTGCATATTTGTATGTA > 1:2550752/1‑36 AATAATTATGATTATTTTTGTGCATATTTGTATGT > 1:2803211/1‑35 TTTTTGTGCATATTTGTATGTACGCATTCGTTTATTTTCGAACGT < 1:2603574/45‑1 TTTTTGTGCATATTTGTATGTACGCATTCGTTTATTTTCGAACGT < 1:1008954/45‑1 TACGCATTCGTTTATTTTCGTACGTGTACATACAAATATGCACAAAAATAATCATAATTATTTTCTG < 1:1626117/67‑1 TACGCATTCGTTTATTTTCGAACGTGTACATACAAA < 1:1664285/36‑1 ACGCATTCGTTTATTTTCGAACGTGTACATAGAAATATGCACAAAAATAATC > 1:1434176/1‑52 ACGCATTCGTTTATTTTCGAACGTGTACATACAAATATGCACAAAAATAATC > 1:1218620/1‑52 ACGCATTCGTTTATTTTCGAACGTGTACATACAAATATGCACAAAAATAATC > 1:3667930/1‑52 CGCATTCGTTTATTTTCGAACGTGTACATACAAATATGCACAAAAATAATCATAATTATTTTCTGAGATGC < 1:894931/71‑1 CGCATTCGTTTATTTTCGAACGTGTACATACAAATATGCACAAAAATAATCATAATTATTTTCTGAGATG > 1:3400887/1‑70 CGCATTCGTTTATTTTCGAACGTGTACATACAAATATGCACAAAAATAATCATAATTATTTTCTGAGATG > 1:2814248/1‑70 CGCATTCGTTTATTTTCGAACGTGTACATACAAATATGCACAAAAATAATCATAATTATTTTCTGAGATG > 1:254383/1‑70 CGCATTCGTTTATTTTCGAACGTGTACATACAAATATGCACAAAAATAATCATAATTATTTTCTGAGATG > 1:1803384/1‑70 CGCATTCGTTTATTTTCGAACGTGTACATACAAATATGCACAAAAATAATCATAATTATTTTCTGAGATG > 1:1637069/1‑70 CGCATTCGTTTATTTTCGAACGTGTACATACAAATATGCACAAAAATAATCATAATTATTTTCTGAGATG > 1:795497/1‑70 CGCATTCGTTTATTTTCGAACGTGTACATACAAATATGCACAAAAATAATCATAATTATT < 1:1979249/60‑1 CGCATTCGTTTATTTTCGAACGTGTACATACAAATA > 1:2618863/1‑36 CGCATTCGTTTATTTTCGAACGTGTACATACAAATA > 1:1052716/1‑36 CGAAATTGGTGTTCATATCATAATGCATCTCAGAAAATAATTATGATTATTTTTGTGCATATTTGTATGTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/1435403‑1435474‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacGCATTCGTTTATTTTCGAACGTGTACATACAAATATGCACAAAAATAATCATAATTATTTTCTGAGATGC < W3110S.gb/1435496‑1435427 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |