New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 2997532	61 (1.280)	3 (0.070)	3/88	NT	4.7%	intergenic (‑48/+108)	ygeQ/glyU	hypothetical protein/tRNA‑Gly
	?	W3110S.gb	= 2997542	68 (1.660)					intergenic (‑58/+98)	ygeQ/glyU	hypothetical protein/tRNA‑Gly
Rejected: Frequency below/above cutoff threshold.

AAGAGTTAATGCAGATTTCCCTTTCATAAAATATTCCATCAATCGTTTGTTAAAAGCGTAGATAACCACTTATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/2997458‑2997532 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttatttTCAAGTTGTTAAATAAGTGGTTATCTACGCTTTTAACAAACGATTGATGGAATATTTTATGAAAGGGAA  <  W3110S.gb/2997542‑2997474                                                                                                                                                  AAGAGTTAATGCAGATTTCCCTTTCATAAAATATTCCATCAATCGTTTGTTAAAAGCGTAGATAACCACTT                                                                           <  1:3575389/71‑1     GTTAATGCAGATTTCCCTTTCATAAAATATTCCATCAATCGTTTGTTAAAAGCGTAGATAACCACTTATT                                                                        >  1:1362307/1‑70     GTTAATGCAGATTTCCCTTTCATAAAATATTCCATCAATCGTTTGTTAAAAGCGTAGATAACCACTTATT                                                                        <  1:4219684/70‑1     GTTAATGCAGATTTCCCTTTCATAAAATATTCCATCAATCGTTTGTTAAAAGCGTAGATAACCACTTATT                                                                        >  1:2133961/1‑70                      TTTCATAAAATATTCCATCAATCGTTTGTTAAAAGCGTAGATAACCACTT                                                                           <  1:3957365/50‑1                        TCATAAAATATTCCATCAATCGTTTGTTAAAAGCGTAGATAACCACTTATTTTCAAGTTGTTAAATAAGT                                                     >  1:1930919/1‑70                           TAAAATATTCCATCAATCGTTTGTTAAAAGCGTAGATAACCACTTATTT                                                                       <  1:1958747/49‑1                           TAAAATATTCCATCAATCGTTTGTTAAAAGCGTAGATAACCACTTATTT                                                                       <  1:3263319/49‑1                            AAAATATTCCATCAATCGTTTGTTAAAAGCGTAGATAACCAC                                                                             >  1:631506/1‑42                             AAATATTCCATCAATCGTTTGTTAAAAGCGTAGATAACCACTTATTTTCAAGTTGTTAAATAAGTG                                                    >  1:2772397/1‑66                                             GTTTGTTAAAAGCGTAGATAACCACTTATTTTCAAGTTGTTAAAT                                                         <  1:1058753/45‑1                                                                    caTTATTTTCAAGTTGTTAAATAAGTGGTTATCTACGCTTTTAACAAACGATTGATGGAATATTTTATGAA        <  1:3332974/69‑1                                                                     CTTATTTTCAAGTTGTTAAATAAGTGGTTATCTACGCTTTTAACAAACGATTGATGGAATATTTTATGAAA       <  1:3689002/71‑1                                                                     CTTATTTTCAAGTTGTTAAATAAGTGGTTATCTACGCTTTTAACAAACGATTGATGGAATATTTTATGAAA       <  1:2195858/71‑1                                                                     CTTATTTTCAAGTTGTTAAATAAGTGGTTATCTACGCTTTTAACAAACGATTGATGGAATATTTTATGAA        <  1:1459658/70‑1                                                                     CTTATTTTCAAGTTGTTAAATAAGTGGTTATCTACGCTTTTAACAAACGATTGATGGAATATTTTATGA         >  1:3408453/1‑69                                                                      TTATTTTCAAGTTGTTAAATAAGTGGTTATCTACGCTTTTAACAAACGATTGATGGAATATTTTATGA         <  1:3595871/68‑1                                                                      TTATTTTCAAGTTGTTAAATAAGTGGTTATCTACGCTTTTAACAAAC                              <  1:3335393/47‑1                                                                        ATTTTCAAGTTGTTAAATAAGTGGTTATCTACGCTTTTAACAAACGATTGATGGAATATTTTATGAAAGG     >  1:3351269/1‑70                                                                        ATTTTCAAGTTGTTAAATAAGTGGTTATCTACGCTTTTAACAAACGATTGATGGAATATTTTATGAAAGG     >  1:4166672/1‑70                                                                        ATTTTCAAGTTGTTAAATAAGTGGTTATCTACGCTTTTAACAAACGA                            >  1:3850320/1‑47                                                                         TTTTCAAGTTGTTAAATAAGTGGTTATCTACGCTTTTAACAAACGATTGATGGAATATTTTATGAAAGGGA   <  1:2303021/71‑1                                                                         TTTTCAAGTTGTTAAATAAGTGGTTATCTACGCTTTTAACAAACGATTGA                        <  1:2301660/50‑1                                                                          TTTCAAGTTGTTAAATAAGTGGTTATCTACGCTTTTAACAAACGATTGATGGAATATTTTATGAAAGGGA   >  1:2545681/1‑70                                                                           TTCAAGTTGTTAAATAAGTGGTTATCTACGCTTTTAACAAACGATTGATGGAATATTTTATGAAAGGGAA  <  1:3617213/70‑1                                                                           TTCAAGTTGTTAAATAAGTGGTTATCTACGCTTTTAACAAACGATTGATGGAATATTTTATGAAAGGGAA  <  1:3829517/70‑1                                                                                                                                                  AAGAGTTAATGCAGATTTCCCTTTCATAAAATATTCCATCAATCGTTTGTTAAAAGCGTAGATAACCACTTATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/2997458‑2997532 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttatttTCAAGTTGTTAAATAAGTGGTTATCTACGCTTTTAACAAACGATTGATGGAATATTTTATGAAAGGGAA  <  W3110S.gb/2997542‑2997474

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.