| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 3539665 = | 92 (1.940) | 3 (0.070) | 3/90 | NT | 4.0% | coding (433/1470 nt) | rhaB | rhamnulokinase |
| ? | W3110S.gb | 3539699 = | 63 (1.510) | coding (467/1470 nt) | rhaB | rhamnulokinase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGGTCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/3539740‑3539665‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgctcACGCTCTGCTGATGCCGGATTACTTCAGTTATCGCCTGACCGGCAAGATGAACTGGGAATATACC > W3110S.gb/3539699‑3539763 CGGTCAGGCGATAACTGAAGTAATCCTGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGT < 1:402392/71‑1 TCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGC < 1:2116866/71‑1 AGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCT < 1:1258817/70‑1 CTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCT < 1:1428355/61‑1 CTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCT < 1:1903474/61‑1 AGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGT < 1:3482810/39‑1 CAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTG > 1:1220046/1‑39 CAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTG > 1:2782585/1‑39 CAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTG > 1:1818069/1‑39 AGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCACGCTC > 1:2380425/1‑39 TGTGTGGAATAAGTTCAGGTTGTTGCTCACGCTCTGCTGATGCCGGATTACTTCAGTTATCGCCTG < 1:1008664/66‑1 GAATAAGTTCAGGTTGTTGCTCACGCTCTGCTGATGCCGGATTACTTCAGTTATCGCCTGACCGGCAAGAT < 1:4050383/71‑1 TTGCTCACGCTCTGCTGATGCCGGATTACTTCAGTTATCGCCTGACCGGCAAGATGAACTGGGAATATACC < 1:3560200/71‑1 TTGCTCACGCTCTGCTGATGCCGGATTACTTCAGTTATCGCCTGACCGGCAAGATGAACTGGGAATATAC > 1:3740344/1‑70 GCTCACGCTCTGCTGATGCCGGATTACTTCAGTTATCGCCTGA > 1:1807030/1‑43 TCACGCTCTGCTGATGCCGGATTACTTCAGTTATCGCCTGACCGGCAAGATGAACTGGGAATATACC < 1:3349335/67‑1 TCACGCTCTGCTGATGCCGGATTACTTCAGTTATCGCCTGACCGGCAAGATG < 1:3936466/52‑1 TCACGCTCTGCTGATGCCGGATTACTTCAGTTATCGCCTGACCGGCAAGATG < 1:640155/52‑1 CGGTCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/3539740‑3539665‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgctcACGCTCTGCTGATGCCGGATTACTTCAGTTATCGCCTGACCGGCAAGATGAACTGGGAATATACC > W3110S.gb/3539699‑3539763 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |