| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 3873994 = | 95 (2.000) | 4 (0.090) | 3/94 | NT | 5.1% | coding (87/843 nt) | yibA | lyase containing HEAT‑repeat |
| ? | W3110S.gb | 4016463 = | 63 (1.440) | pseudogene (68/246 nt) | yrhC | ECK3468:JW5678:b4552; hypothetical protein fragment | |||||
CCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTTATATAATCAATGTAAGAAACTAAATGATGATGAATTATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/3874066‑3873994‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atttAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTG > W3110S.gb/4016463‑4016532 CCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTTATATAATCAATGTAAGAAACTAAATGATGATGAATTAT > 1:764370/1‑71CCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTTATATAATCAATGTAAGAAACTAAATGATGATGAATTAT < 1:699/71‑1CCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTTATATAATCAATGTAAGAAACTAAATGATGATGAATTA < 1:320368/70‑1 AAGAGTATGGTTTATATAATCAATGTAAGAAACTAAATGATGATGAATTAT > 1:3038325/1‑51 AAGAGTATGGTTTATATAATCAATGTAAGAAACTAAATGATGATGAATTAT > 1:4186635/1‑51 TATGGTTTATATAATCAATGTAAGAAACTAAATGATGATGAATTAT < 1:4312864/46‑1 TGGTTTATATAATCAATGTAAGAAACTAAATGATGATGAATTAT < 1:2259325/44‑1 GTTTATATAATCAATGTAAGAAACTAAATGATGATGAATTATT < 1:353561/43‑1 GTTTATATAATCAATGTAAGAAACTAAATGATGATGAATTAT > 1:3362975/1‑42 TATATAATCAATGTAAGAAACTAAATGATGATGAATTAT < 1:2702045/39‑1 TATATAATCAATGTAAGAAACTAAATGATGATGAATTAT < 1:2967231/39‑1 GAAACTAAATGATGATGAATTATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGC < 1:1402992/66‑1 AACTAAATGATGATGAATTATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTT > 1:710734/1‑71 CTAAATGATGATGAATTATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTT < 1:2206965/71‑1 GATGAATTATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTG > 1:896562/1‑65 ATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACA > 1:2388091/1‑71 ATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACA > 1:2019902/1‑71 ATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACA > 1:1988372/1‑71 ATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGAC < 1:3139222/70‑1 ATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGAC < 1:2569247/70‑1 TAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTG > 1:3489734/1‑71 TAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATT < 1:4328136/70‑1 TAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACA > 1:3572889/1‑68 CCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTTATATAATCAATGTAAGAAACTAAATGATGATGAATTATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/3874066‑3873994‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atttAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTG > W3110S.gb/4016463‑4016532 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |