| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | W3110S.gb | 4,310,365 | Δ1,199 bp | 100% | insH–[alsK] | insH, [alsK] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | W3110S.gb | 4310365–4311562 | 4311563 | 2–1199 | 67 [0] | [0] 68 | insH–[alsK] | insH,[alsK] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 4310364 | 0 (0.000) | 49 (1.120) | 32/94 | NT | 100% | intergenic (‑286/‑69) | yjcS/insH | predicted alkyl sulfatase/IS5 element protein |
| ? | W3110S.gb | 4311564 = | 0 (0.000) | coding (916/1029 nt) | alsK | D‑allose kinase | |||||
ATATATATTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/4310291‑4310364‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttagCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGA > W3110S.gb/4311564‑4311633 ATATATATTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTT > 1:1841892/1‑71 TATATTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAG < 1:474405/71‑1 ATATTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAG > 1:3425412/1‑70 TTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCA > 1:3146443/1‑69 CTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTG < 1:3032690/71‑1 CTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTG < 1:2580733/71‑1 GTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAA > 1:279955/1‑66 GTCGTTGGCACAGCGGGACATGGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAA > 1:4222029/1‑66 TCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGG > 1:1639960/1‑71 TCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGT > 1:3221595/1‑69 TCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGT > 1:1554984/1‑69 TCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGT > 1:4348934/1‑69 GTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC > 1:3553163/1‑70 GTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC > 1:2563962/1‑70 GGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAA < 1:1162135/70‑1 GCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAAA < 1:861823/70‑1 GCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACT < 1:3820849/61‑1 CAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACG > 1:4075566/1‑71 CAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACA > 1:3338384/1‑53 AGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACGT < 1:2541600/71‑1 GCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTT < 1:1711667/71‑1 GCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTT < 1:1958421/71‑1 GACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGA < 1:880685/49‑1 CATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAA > 1:304813/1‑61 ATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTTGATGCGC > 1:2591430/1‑71 TTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAA > 1:1496952/1‑59 TTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAA < 1:4282628/46‑1 TTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAG < 1:1378956/44‑1 TTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTT < 1:106933/37‑1 TGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTTGATGCGCC > 1:995217/1‑70 GCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTTGA > 1:1429517/1‑63 CGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAA > 1:2735392/1‑70 CGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAA > 1:582267/1‑70 CGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAA < 1:220270/70‑1 CTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAATAT < 1:3734537/68‑1 CTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTT < 1:3338685/55‑1 TGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAATATTG < 1:1609487/69‑1 GTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAAAA > 1:1371938/1‑48 TGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAATATTGCTG < 1:1124974/70‑1 TGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAATATTGCTG > 1:1485306/1‑70 TGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAA > 1:2191350/1‑62 TGCCAACGTTTTACTCATGGGGCTTTAGCACAGAAC < 1:3591879/36‑1 TGCCAACGTTTTACTCATGGGGCTTTAGCACAGAAC < 1:4238260/36‑1 GCCAACGTTTTACTCATGGGGCTTTAGCACAGAAC < 1:4243157/35‑1 CCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAATATTGCTGCA < 1:1759219/70‑1 AACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAATATTGCTGCACCC < 1:2358884/71‑1 AACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAATATTGCTGCACCC < 1:4123566/71‑1 CGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAATATTGCTGCACCCTG < 1:604056/71‑1 CGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAATATTGCTGCACCCT > 1:1837516/1‑70 GTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTTGA > 1:3876180/1‑47 GTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTTGA > 1:659469/1‑47 GTTTTACTCATGGGGCTTTAGCACAGAACTGAGGC‑AAAAAACGTTGATGCGCCAATATTGCTGCACCCT > 1:2699167/1‑69 TTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTT < 1:4305421/44‑1 TTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCG > 1:4221921/1‑71 GGGGCTTTAGCACAGAACTGTGGCAAAAAAACGTTGA > 1:649106/1‑37 GGGGCTTTAGCACAGAACTGTGGCAAAAAAACGTTGA > 1:3890061/1‑37 GGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAG < 1:3680984/71‑1 GGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAG < 1:152248/71‑1 GGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAG < 1:3676025/71‑1 TAGCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGA < 1:3282049/70‑1 TAGCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAG < 1:3451438/69‑1 TAGCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAA > 1:527870/1‑63 AGCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAA < 1:4402698/70‑1 AGCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAA < 1:3023271/70‑1 AGCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAG > 1:3051271/1‑68 GCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGA < 1:4085840/71‑1 GCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAG < 1:607160/70‑1 GCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAG < 1:2470433/70‑1 GCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAG < 1:3826635/70‑1 ATATATATTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/4310291‑4310364‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttagCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGA > W3110S.gb/4311564‑4311633 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |