| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 3982674 = | 91 (1.830) | 3 (0.070) | 3/84 | NT | 4.1% | intergenic (‑623/+176) | gadE/hdeD | DNA‑binding transcriptional activator/acid‑resistance membrane protein |
| ? | W3110S.gb | 3982703 = | 61 (1.430) | intergenic (‑652/+147) | gadE/hdeD | DNA‑binding transcriptional activator/acid‑resistance membrane protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATTGAAATAATTACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/3982750‑3982674‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaattagATGAAATTCAGTAGGTTGAAATAATCACTAGCAGGTAATTATTTCAATGATAGTGCGCAATTGATCTAC > W3110S.gb/3982703‑3982771 ATTGAAATAATTACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCA < 1:1010403/71‑1 TTGAAATAATTACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAA < 1:669469/71‑1 TTGAAATAATTACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCA > 1:4442741/1‑70 GAAATAATTACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAAT > 1:4444845/1‑71 AAATAATTACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATT < 1:4274338/71‑1 AAATAATTACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATT < 1:4176777/71‑1 ATAATTACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAG > 1:3307332/1‑71 GCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATT > 1:1436155/1‑59 TGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCA < 1:4415547/50‑1 ATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAAT < 1:4218381/51‑1 ATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAA > 1:4324249/1‑50 TTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAA > 1:4637150/1‑46 CTACTGAATTTCATCTAATTTTTTTCACTCTATGGCA < 1:2795207/37‑1 TACTGAATTTCATCTAATTTTTTTCACTCTATGGCA < 1:3838215/36‑1 TCATCTAATTTTTTTCACTCTATGGCAAATTAGATGAAATTCAGTAGGTTGAAATAATCACTAGCAGGTAA > 1:3989409/1‑71 TTTTTTTCACTCTATGGCAAATTAGATGAAATTCAGTAGGTTGAAATAATC < 1:4412015/51‑1 TTTTTCACTCTATGGCAAATTAGATGAAATTCAGTAGGTTGAAATAATCAC > 1:2191495/1‑51 GATGAAATTCAGTAGGTTGAAATAATCACTAGCAGGTAATTATTTCAATGATAGTGCGCAATTGATCTAC < 1:2313058/70‑1 ATTGAAATAATTACCTGCTAGTGATTATTTCAACCTACTGAATTTCATCTAATTTTTTTCACTCTATGGCAAATTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/3982750‑3982674‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaattagATGAAATTCAGTAGGTTGAAATAATCACTAGCAGGTAATTATTTCAATGATAGTGCGCAATTGATCTAC > W3110S.gb/3982703‑3982771 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |