New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 315707	NA (NA)	49 (1.280)	31/100	NT	100%	coding (654/687 nt)	ykgA	predicted DNA‑binding transcriptional regulator
	?	W3110S.gb	576911 =	0 (0.000)					coding (76/498 nt)	ybcS	predicted lysozyme

CTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/315639‑315707 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTA  >  W3110S.gb/576911‑576979                                                                                                                                            CTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAA                                                                      <  1:508483/70‑1    AGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGG                                                                  >  1:2654638/1‑71    AGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGG                                                                  >  1:1217172/1‑71     GTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGC                                                                 <  1:3243641/71‑1      TCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGC                                                                 >  1:204657/1‑70      TCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAA                                                                      <  1:771527/65‑1          GAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAG                                                            >  1:684386/1‑71            ACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTG                                                          >  1:1299815/1‑71            ACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTG                                                          >  1:1453631/1‑71              AATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGG                                                         >  1:2602242/1‑70                  TGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAAC                                                     <  1:3109625/70‑1                  TGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAAC                                                     >  1:3315882/1‑70                  TGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAAC                                                                     >  1:3069046/1‑54                  TGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAAC                                                                     >  1:3429958/1‑54                  TGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAA                                                                      >  1:3070602/1‑53                    AAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGAT                                                  <  1:1804235/71‑1                    AAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGAT                                                  <  1:3070351/71‑1                    AAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGA                                                   <  1:1482733/70‑1                     AAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACTTGGGTAGGATCAACTGGCCCAAGTGGTAACGAT                                                  <  1:2335216/70‑1                          AGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGA                                                   <  1:1661269/64‑1                          AGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAA                                                             >  1:1407623/1‑54                          AGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAA                                                                      <  1:48068/45‑1                           GAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGG                                           <  1:2810129/71‑1                           GAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGA                                                   >  1:2984313/1‑63                                TCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAAC                                                     >  1:1717910/1‑56                                TCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAA                                                                      >  1:1392295/1‑39                                TCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAA                                                                      >  1:2435007/1‑39                                 CGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTG                                     >  1:995256/1‑71                                 CGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTG                                     >  1:701281/1‑71                                 CGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTG                                            >  1:280404/1‑64                                 CGCTTAGGCCTGTGTCCATATTAAGTGGGTAGGATCAACTGG                                                                  >  1:1010855/1‑42                                  GCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGAT                                                  >  1:2084130/1‑57                                     TAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAG                                 >  1:3391228/1‑71                                     TAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAG                                 >  1:2549676/1‑71                                      AGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGC                                >  1:449869/1‑71                                      AGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCA                                  <  1:266661/69‑1                                          CTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTAC                             >  1:3232333/1‑70                                           TGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTA                              <  1:1116436/68‑1                                           TGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTA                              <  1:2602036/68‑1                                            GTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTA                              <  1:1679180/67‑1                                             TGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATAC                         >  1:332866/1‑71                                             TGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATAC                         >  1:1548921/1‑71                                             TGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATAC                         >  1:167882/1‑71                                             TGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACA                            >  1:746872/1‑68                                               TCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCA                       >  1:3151881/1‑71                                               TCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGT                                      <  1:2286836/56‑1                                                 CATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTC                                              >  1:1570277/1‑46                                                  ATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAAC                                                     <  1:1645822/38‑1                                                   TATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATAC                    >  1:2414235/1‑70                                                   TATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATA                          >  1:2306834/1‑64                                                   TATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATA                          >  1:3008936/1‑64                                                    ATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATAC                         <  1:1400162/64‑1                                                    ATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGA                                                   >  1:2953873/1‑38                                                    ATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACG                                                    >  1:177306/1‑37                                                     TTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTTGAAGGTGTCAGCTACATACCATACA                   >  1:3370800/1‑69                                                     TTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACA                   >  1:3055255/1‑69                                                     TTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACA                   >  1:3168181/1‑69                                                       ACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGT                                    >  1:1995076/1‑50                                                             GTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGT         <  1:537315/71‑1                                                                GGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGG      >  1:805951/1‑71                                                                 GATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAG                                        <  1:1914660/36‑1                                                                 GATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAG                                        <  1:2949520/36‑1                                                                  ATCAACTGGCCCAAGTGGTAACGATGGTCTGCAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTG    <  1:1613560/71‑1                                                                   TCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTG    >  1:661943/1‑70                                                                   TCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATA             >  1:1445114/1‑61                                                                   TCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATA             >  1:72635/1‑61                                                                   TCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGT                                      <  1:382895/36‑1                                                                   TCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGT                                      <  1:2471864/36‑1                                                                   TCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGT                                      <  1:3172878/36‑1                                                                    CAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTA  >  1:743033/1‑71                                                                     AACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTA  <  1:2519875/70‑1                                                                                                                                            CTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/315639‑315707 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTA  >  W3110S.gb/576911‑576979

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.