| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | W3110S.gb | 2,176,983 | Δ1,199 bp | 100% | [gatA]–[gatA] | [gatA], insH, [gatA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | W3110S.gb | 2176983–2178179 | 2178181 | 3–1199 | 54 [0] | [0] 54 | [gatA]–[gatA] | [gatA],insH,[gatA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2176982 | 0 (0.000) | 33 (0.960) | 23/90 | NT | 100% | coding (71/321 nt) | gatA | galactitol‑specific enzyme IIA component of PTS |
| ? | W3110S.gb | 2178182 = | 0 (0.000) | coding (202/315 nt) | gatA | galactitol‑specific enzyme IIA component of PTS | |||||
CGTCGTTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2176908‑2176982‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTGC > W3110S.gb/2178182‑2178251 CGTCGTTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGAC < 1:2484328/71‑1CGTCGTTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGAC < 1:868202/71‑1 CGTTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACT > 1:1789087/1‑69 CGTTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACT > 1:1710845/1‑69 GTTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTA < 1:1591208/70‑1 GTTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTA < 1:1595477/70‑1 GTTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACT > 1:2575010/1‑68 GTTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACT > 1:91510/1‑68 TTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGC < 1:2537101/71‑1 TTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGC < 1:2208594/71‑1 TTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGC < 1:2582076/71‑1 TATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCA > 1:1267231/1‑71 ATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAA > 1:535960/1‑71 TCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTA > 1:1298783/1‑63 TCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGA < 1:1131367/66‑1 CGCTTGCTGAAAATGAACTTTAATTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAAT > 1:326036/1‑66 GCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATTGCTGACGACTTAGCATGAATCGCCTCAC < 1:1910436/69‑1 AAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGC > 1:827158/1‑70 AAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAA > 1:1395068/1‑66 AATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGT < 1:1570933/71‑1 ATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCT < 1:1029597/59‑1 ATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCT < 1:2560712/59‑1 TGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCG > 1:2556782/1‑55 TGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAAT > 1:3587175/1‑53 TGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAAT > 1:527493/1‑53 ACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGC < 1:1451680/71‑1 TATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAAT > 1:194348/1‑46 ATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATA < 1:1402369/70‑1 GTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTG > 1:1408002/1‑71 GTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTAT < 1:3222619/59‑1 GTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTAT < 1:20428/59‑1 TTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGC < 1:2257404/71‑1 TTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTC > 1:948863/1‑70 AACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAA > 1:2592395/1‑42 AACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAA > 1:1072689/1‑42 ACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGT > 1:1575026/1‑60 AGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCAT < 1:1086760/71‑1 AGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTC < 1:2078766/65‑1 GATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATA < 1:906155/53‑1 GATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATA < 1:3257889/53‑1 GATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATA < 1:514205/53‑1 ATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTA > 1:2117716/1‑71 ATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTA > 1:1763898/1‑71 TAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCA < 1:1503381/48‑1 AAATGGCTGACGACTTAGCATGAATCGCCTCACAA > 1:70823/1‑35 AAATGGCTGACGACTTAGCATGAATCGCCTCACAA > 1:1910001/1‑35 TGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCA > 1:3177600/1‑59 GACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAG < 1:533034/43‑1 GACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAG < 1:99827/43‑1 GACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAG < 1:3272327/43‑1 ACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGG < 1:2352446/71‑1 ACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGG < 1:2290081/71‑1 ACGACTTAGCATGAATCGCCTCACAATGCGGTATTGC < 1:650403/37‑1 ACGACTTAGCATGAATCGCCTCACAATGCGGTATTGC < 1:1417055/37‑1 CGACTTAGCATGAATCGCCTCACAATGCGGTATTGC < 1:2171507/36‑1 GACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAG < 1:1208202/53‑1 ACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAAT < 1:1801161/71‑1 ACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAA < 1:2886248/70‑1 AGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTG > 1:2333143/1‑71 AGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCT < 1:1583415/70‑1 AGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTC < 1:585690/69‑1 AGCATGAATCGCCTCACAATGCGGTATTGCAATAG > 1:1097208/1‑35 GCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTGC < 1:1688252/71‑1 CGTCGTTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2176908‑2176982‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTGC > W3110S.gb/2178182‑2178251 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |