New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	2992793 =	70 (1.820)	3 (0.080)	3/94	NT	5.0%	pseudogene (97/375 nt)	pbl	ECK2852:JW5457:b2854; predicted peptidoglycan‑binding enzyme
	?	W3110S.gb	2992812 =	48 (1.330)					pseudogene (116/375 nt)	pbl	ECK2852:JW5457:b2854; predicted peptidoglycan‑binding enzyme

GTTTATCTGCATTAACCAATAATCTAAACTCTTTATATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/2992831‑2992793 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attATTGGTTAATGCAGATAAACCAGATGCATATT  >  W3110S.gb/2992812‑2992843                                                                         GTTTATCTGCATTAACCAATAATCTAAACTCTTTATATT                                  <  1:3531966/39‑1                     AATCTAAACTCTTTATATTATTGGTTAATGCAGATAAACCA            <  1:2384428/41‑1                       TCTAAACTCTTTATATTATTGGTTAATGCAGATAAACCAGA          >  1:403947/1‑41                         TAAACTCTTTATATTATTGGTTAATGCAGATAAACCAGATGCATATT  >  1:1131663/1‑47                                                                         GTTTATCTGCATTAACCAATAATCTAAACTCTTTATATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/2992831‑2992793 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attATTGGTTAATGCAGATAAACCAGATGCATATT  >  W3110S.gb/2992812‑2992843

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.