New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	1439508 =	33 (0.610)	4 (0.080)	3/92	NT	8.7%	coding (2991/3525 nt)	ydbK	fused predicted Fe‑S subunit of pyruvate‑flavodoxin oxidoreductase
	?	W3110S.gb	1439539 =	54 (1.080)					coding (2960/3525 nt)	ydbK	fused predicted Fe‑S subunit of pyruvate‑flavodoxin oxidoreductase

GATCATGTATTGAGTTTGACGGAAAACGTCAACATTCTGGTGCTGGATACGCAATGCTATTCCAACACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/1439576‑1439508 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccAGAATGTTGACGTTTTCCGTCAAACTCAATACATGATCCAGACCGCCAAAGCCGATATCGTAAGCCCAGC  >  W3110S.gb/1439539‑1439608                                                                                                                                             GATCATGTATTGAGTTTGACGGAAAACGTCAACATTCTGGTGCTGGATACGCAATGCTATTCCAACACC                                                                        <  1:1527911/69‑1                                            TGGATACGCAATGCTATTCCAACACCAGAATGTTG                                                               >  1:1356139/1‑35                                            TGGATACGCAATGCTATTCCAACACCAGAATGTTG                                                               >  1:2238541/1‑35                                                 ACGCAATGCTATTCCAACACCGGAATGTTGACGTTTTCCGTCAAACTCAATACATGATCCAGACCGCCA                        >  1:1933572/1‑69                                                   GCAATGCTATTCCAACACCAGAATGTTGACGTTTTCCGTCAAACTC                                             >  1:2656090/1‑46                                                                  CACCAGAATGTTGACGTTTTCCGTCAAACTCAATACATGATCCAGACCGCCAAAGCCGATATCGTAAGCC      >  1:4162448/1‑70                                                                     CAGAATGTTGACGTTTTCCGTCAAACTCAATACATGATCCAGACCGCCAAAGCCGATATCGTAAGCCCAGC  <  1:1183528/71‑1                                                                                                                                             GATCATGTATTGAGTTTGACGGAAAACGTCAACATTCTGGTGCTGGATACGCAATGCTATTCCAACACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/1439576‑1439508 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccAGAATGTTGACGTTTTCCGTCAAACTCAATACATGATCCAGACCGCCAAAGCCGATATCGTAAGCCCAGC  >  W3110S.gb/1439539‑1439608

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.