| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2172308 = | NA (NA) | 69 (1.300) | 43/98 | NT | 100% | pseudogene (1563/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | W3110S.gb | = 3920281 | 0 (0.000) | coding (88/213 nt) | cspA | major cold shock protein | |||||
TCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/2172376‑2172308‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGTCCTT < W3110S.gb/3920281‑3920211 TCATGTGAGTCACCTCTGACTGAGAGTTTACTCTCTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAG < 1:3340756/70‑1TCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAG < 1:5077385/70‑1TCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAG < 1:1399082/70‑1 CATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGT > 1:2732017/1‑70 ATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGT > 1:235813/1‑71 ATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGT > 1:4035835/1‑71 ATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTG < 1:877353/70‑1 TGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGTGTAAGATCAGTGT > 1:3486748/1‑70 TGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCG < 1:4934878/71‑1 AGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAG > 1:4584581/1‑63 TCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGTTAAGATCAG < 1:1227354/61‑1 ACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACAC < 1:615811/70‑1 ACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACAC < 1:5086917/70‑1 CTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAG > 1:3101435/1‑57 GACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCT < 1:211699/68‑1 GACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACAC > 1:3312719/1‑64 ACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTG > 1:4741522/1‑70 CTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGT < 1:1988772/58‑1 TGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACA > 1:2325991/1‑60 TGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGT < 1:292127/53‑1 GAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTA < 1:3691541/70‑1 AGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTA > 1:1887496/1‑56 AGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAG > 1:2641584/1‑48 AGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTt > 1:207169/1‑47 AGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTA > 1:4209627/1‑54 TTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTG < 1:4611419/62‑1 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAAC > 1:102068/1‑71 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAAC > 1:1181521/1‑71 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAAC > 1:1626783/1‑71 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCT > 1:3000065/1‑62 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAG < 1:4998572/42‑1 CTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAAC < 1:5179096/69‑1 CTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAG > 1:3971746/1‑40 TCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTA > 1:1693819/1‑47 TCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTA > 1:4691517/1‑47 TCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTT < 1:2250495/43‑1 ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGG > 1:4680208/1‑71 CTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGT < 1:3352259/71‑1 CTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTA < 1:1827319/44‑1 CTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTT < 1:930981/40‑1 TAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTA > 1:2029077/1‑71 TAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTA > 1:2235812/1‑71 TAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACA > 1:941321/1‑44 TAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACA > 1:3786040/1‑44 AGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTA > 1:111130/1‑41 CGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATC < 1:815011/71‑1 TGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCT < 1:3890823/70‑1 GTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCT > 1:4822662/1‑71 GTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTC < 1:1089546/41‑1 TCCACTATTGCTGGGTAAGATCAGTGTTCGTACACATCTCTTCTATCCAGAACGATGGTTACAAATCTCT > 1:2932659/1‑70 CCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTG > 1:3689701/1‑41 CACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGA > 1:4656818/1‑71 CACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGG < 1:1902089/70‑1 CACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGG > 1:4466123/1‑70 CACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCT > 1:1963789/1‑68 CACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGA > 1:4234097/1‑53 ACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATG < 1:3228021/54‑1 ACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATG < 1:5023745/54‑1 CTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGAC > 1:3650312/1‑70 ATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCT > 1:2830019/1‑35 ATTGCTGGGTAAGATCAATGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACG > 1:3232022/1‑69 TTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAG > 1:3529072/1‑71 TTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAG > 1:3743179/1‑71 TTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAG > 1:5121975/1‑71 TGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAAC < 1:696548/45‑1 GCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGT > 1:695836/1‑71 GCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAG < 1:3469050/69‑1 GCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGA > 1:1825980/1‑64 GCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTT > 1:2629719/1‑51 CTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGT < 1:3251941/70‑1 CTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGT > 1:5121685/1‑70 TGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAA > 1:4383231/1‑54 GGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGA < 1:243353/71‑1 GGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGA < 1:262138/71‑1 GGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGA < 1:1927648/71‑1 GGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGA < 1:166700/71‑1 GGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGA < 1:4141819/71‑1 GGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAG < 1:3820869/70‑1 GGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAG > 1:373378/1‑70 GGTAAGATCAGTGTTCGTACACTTCTCTGCAATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAG > 1:4124708/1‑70 TAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTAAAAATCTCTGGACGAAGGTCAGA > 1:4892645/1‑69 AAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGG < 1:3656316/56‑1 AAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCT < 1:2035043/52‑1 AAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGA > 1:2077651/1‑39 AGATCAGTGTTCGTACACTTCTCTTCTATCCAGAACGATTGTTACATATCTCTGGACGAAGGTCAGAAA < 1:483063/69‑1 AGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGT < 1:2480037/71‑1 AGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGT < 1:599454/71‑1 GATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTG < 1:1624021/71‑1 GATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTG < 1:248067/71‑1 GATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTG > 1:1962312/1‑71 ATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAG < 1:1080170/64‑1 ATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGGCAGAta < 1:4045695/67‑3 TCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGT < 1:2477223/70‑1 CAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGTCC > 1:1788359/1‑71 CAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGTCC > 1:966614/1‑71 GTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGTCCTT < 1:709037/71‑1 TCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/2172376‑2172308‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGTCCTT < W3110S.gb/3920281‑3920211 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |