| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2412225 | NA (NA) | 97 (1.790) | 49/100 | NT | 87.4% | intergenic (‑55/‑782) | insA/yfbQ | IS1 element protein/predicted aminotransferase |
| ? | W3110S.gb | = 3748807 | 14 (0.260) | coding (176/984 nt) | tnaB | tryptophan transporter of low affinity | |||||
Only 100 of 111 total aligned reads displayed.
AGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2412156‑2412225‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAAT < W3110S.gb/3748807‑3748741 AGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT > 1:2856598/1‑71AGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT > 1:809335/1‑71AGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT > 1:1590154/1‑71 AACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGT < 1:3069831/70‑1 AACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGT < 1:3300975/70‑1 ACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTA > 1:4435212/1‑71 ACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTA < 1:4369203/71‑1 CAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTAT < 1:2148125/71‑1 CAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTAT < 1:565909/71‑1 CAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTAT < 1:1027970/71‑1 AGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATT < 1:4158998/71‑1 tAAGCCACTGTAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTA < 1:3088166/70‑1 GAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTA < 1:2330442/71‑1 GAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTA < 1:2018511/71‑1 AAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAG < 1:4945107/71‑1 AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAG < 1:397545/70‑1 ACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGC > 1:3833573/1‑70 TGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTA > 1:2851417/1‑60 GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAA > 1:1810403/1‑70 GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAG > 1:3784846/1‑63 GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTAT > 1:884127/1‑60 GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTG < 1:4966788/56‑1 GAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATT > 1:2766837/1‑71 GAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTAT > 1:4746032/1‑59 GAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGT > 1:1348928/1‑56 GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTA < 1:32534/71‑1 GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTA < 1:2438037/71‑1 GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATT > 1:4904059/1‑69 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAA > 1:2006173/1‑71 CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATT < 1:2537408/71‑1 CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATT < 1:3867458/71‑1 CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATT < 1:685607/71‑1 CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATT < 1:4406522/65‑1 TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAAT > 1:791603/1‑69 CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTAT > 1:1156947/1‑71 CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTAT > 1:2262485/1‑71 CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTAT > 1:3590597/1‑71 CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTA > 1:4832682/1‑70 CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTA > 1:2334471/1‑70 CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTA > 1:2056282/1‑70 AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATC > 1:2449759/1‑71 AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGT < 1:3392570/47‑1 AAAAACACCATCATACAATAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATC > 1:4048902/1‑71 AAAAACACCATCATACAATAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATC > 1:4042888/1‑71 AAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGA < 1:434892/53‑1 AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCG > 1:433295/1‑71 ACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGT < 1:3285933/71‑1 ACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT > 1:4682918/1‑41 CACCATCATACACTAAATCACTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTC < 1:1945926/71‑1 CCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAA < 1:1367463/59‑1 CCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAA < 1:3150589/52‑1 CCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAA < 1:4514230/52‑1 ATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAA > 1:1710621/1‑43 ATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTA > 1:2541735/1‑40 TACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAG < 1:4038755/71‑1 TACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAA > 1:4629767/1‑52 TACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTA < 1:1445845/51‑1 TACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTA < 1:1451945/51‑1 ACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATC > 1:1803377/1‑57 ACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAG < 1:4603412/39‑1 aACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTA > 1:3535275/2‑54 CACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTT > 1:4962368/1‑71 CACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTT < 1:1145291/48‑1 ACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTT < 1:2008790/71‑1 ACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCC < 1:547132/56‑1 ACTAAATCAGTAAGTT‑GCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCC < 1:1257175/55‑1 CTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTT < 1:4937301/71‑1 CTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTT < 1:4088771/71‑1 CTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTT < 1:3931930/71‑1 CTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTT < 1:3704607/71‑1 CTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTT < 1:1297078/71‑1 CTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTT < 1:2017511/71‑1 CTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTT < 1:2331815/71‑1 CTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAA > 1:455468/1‑48 CTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGAAAATTTAAATTATCCCGTCGGCTCCAGTTTT < 1:5057791/71‑1 TAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTT > 1:4051643/1‑70 TAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTT > 1:4606822/1‑69 TAAATCAGTAAGTTGGCAGCATCACATGTTATTAGAAGCAAATTTAAAATATCCCGTCGG > 1:4914132/1‑60 AAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTA > 1:4376111/1‑70 AAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAA > 1:4724818/1‑47 TCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTC > 1:1889089/1‑59 TCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTA < 1:2137775/42‑1 CAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCG > 1:4500447/1‑51 AGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACC < 1:168465/70‑1 AGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACC < 1:4987580/70‑1 AGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAA > 1:5110211/1‑42 AGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAA > 1:2645350/1‑42 GTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTA < 1:2113209/39‑1 AAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCA > 1:4342166/1‑71 AGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCA < 1:2009578/70‑1 AGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTA > 1:4207814/1‑61 GTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAAT < 1:2493060/38‑1 TTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCA < 1:3411528/71‑1 AGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAG < 1:496368/69‑1 GCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATT > 1:1501108/1‑71 GCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATT > 1:162172/1‑71 CATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTT < 1:3584043/71‑1 CATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCA > 1:114032/1‑46 ATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTA < 1:736118/71‑1 TCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTC < 1:3905675/37‑1 AGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2412156‑2412225‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAAT < W3110S.gb/3748807‑3748741 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |