New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 3874049	80 (1.480)	4 (0.080)	3/94	NT	5.4%	coding (32/843 nt)	yibA	lyase containing HEAT‑repeat
	?	W3110S.gb	= 4016519	65 (1.280)					pseudogene (12/246 nt)	yrhC	ECK3468:JW5678:b4552; hypothetical protein fragment

AGCGAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/3873990‑3874049 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacATACCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGA  <  W3110S.gb/4016519‑4016451                                                                                                                                   AGCGAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACATACCAGAA                                                              >  1:2487804/1‑69          ATTCATCATCATTTAGTTTCTTACATTAATTATATAAACCATACTCTTTAC                                                                       >  1:4590658/1‑51           TTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTT                                                                         <  1:3745128/48‑1                      TTAGTTTCTTACATTGATTATATAAACCATACTCTTT                                                                         >  1:1482338/1‑37                            TCTTACATTGATTATATAAACCATACTCTTTACATACCAGAAAAGAAAGGCAAGTAA                                               <  1:1494538/57‑1                            TCTTACATTGATTATATAAACCATACTCTTTACATACCAGAAAAGAAAGGCAAGTAA                                               <  1:4303404/57‑1                                              AACCATACTCTTTACATACCAGAAAAGAAAGGCAAGTA                                                <  1:2281312/38‑1                                                          TACATACCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTTATATAATAA                          <  1:339956/48‑1                                                          TACATACCAGAAAAGAAAGGCAAGTAAAGAGTATGGTT                                    <  1:804769/38‑1                                                           ACATACCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATG   >  1:1999141/1‑70                                                            CATACCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGA  <  1:4908508/70‑1                                                            CATACCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTTATATAATAAAT                        >  1:4138320/1‑48                                                            CATACCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTTA                                  >  1:4835660/1‑38                                                                                                                                   AGCGAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/3873990‑3874049 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacATACCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGA  <  W3110S.gb/4016519‑4016451

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.