| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 70061 = | 29 (0.500) | 58 (1.280) +CGCGTACAACT |
20/78 | NT | 54.3% | intergenic (‑13/‑326) | araB/araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 236044 = | 97 (1.660) | intergenic (‑42/‑23) | rnhA/dnaQ | ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit | |||||
GATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/70121‑70061‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAA > W3110S.gb/236044‑236109 ||||||||||| GATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAAC > 1:3827580/1‑71 TCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTC < 1:52706/71‑1 CCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTC < 1:3149818/70‑1 ACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAA > 1:1937729/1‑64 CTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCT < 1:4937957/71‑1 CTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCT < 1:1924193/71‑1 CTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATA < 1:1654071/71‑1 TTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAA > 1:4086800/1‑60 TTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAA > 1:3551278/1‑60 TTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAA > 1:4410216/1‑60 ttaTATCGCAACTCTCTACTGTTTCTCCATACCCCTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAA > 1:1868360/4‑71 TTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAAGTCAAGTCTGACATAAA > 1:5181849/1‑71 TTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAA > 1:3238456/1‑71 TTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAAT > 1:4371157/1‑71 TTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAAT > 1:939640/1‑71 TTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAA < 1:1592346/68‑1 TATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATG < 1:4397289/70‑1 TATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATG < 1:105080/70‑1 TATCGCAACTCTCTACTGTTTCTACATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATG < 1:4688132/70‑1 CGCAACTCTCTACTGTTTGTCCATACCCGTTTCTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCG > 1:503679/1‑71 CGCAACTCTCTACTGTTTCTCCATACCCGTTTCTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCG > 1:349485/1‑71 CGCAACTCTCTACTGTTTCTCCATACCCGTTTCTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCG > 1:1752568/1‑71 CGCAACTCTCTACTGTTTCTCCATACCCGTTTCTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCG > 1:288656/1‑71 GCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC < 1:2747098/71‑1 CTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATG < 1:3484027/71‑1 TCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG > 1:813234/1‑70 TACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG < 1:1748695/68‑1 TACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTAT > 1:4856204/1‑65 GTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC > 1:3097568/1‑70 GTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC > 1:3288654/1‑70 GTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTG > 1:4214823/1‑44 TTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC < 1:5130209/69‑1 TTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC < 1:4047024/69‑1 TTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC < 1:3312632/69‑1 CTCCATACCCG‑TTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGA > 1:474190/1‑58 CTCCATACCCG‑TTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGA > 1:3287720/1‑58 ATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACG < 1:2005477/71‑1 ATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACG < 1:522394/71‑1 TACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACG < 1:66909/70‑1 TACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCT < 1:3772590/50‑1 TACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCT < 1:623250/50‑1 TACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCT < 1:619006/50‑1 TACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCT < 1:5159137/50‑1 TACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCT < 1:1397376/50‑1 TACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCT < 1:5321989/50‑1 caCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC > 1:2475804/3‑69 CCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACcc > 1:341546/1‑67 CCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC > 1:4550421/1‑69 CCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC > 1:5052614/1‑69 CCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC > 1:357408/1‑69 CCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC > 1:3452812/1‑69 CCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC > 1:2894360/1‑69 CCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC > 1:1174355/1‑69 TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCT < 1:80628/44‑1 TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCT < 1:3586550/44‑1 TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCT < 1:113909/44‑1 TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCT < 1:5175711/44‑1 TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCT < 1:317538/44‑1 TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCT < 1:1677819/44‑1 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCG < 1:3910732/70‑1 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCG < 1:4284705/70‑1 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCG < 1:4634826/70‑1 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCA > 1:5259392/1‑49 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCA > 1:1268501/1‑49 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCA > 1:4825826/1‑49 GGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTC < 1:5035145/70‑1 GGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTC < 1:977916/70‑1 GGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTC < 1:4981653/70‑1 GGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTC < 1:4894263/70‑1 GGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTC < 1:3258500/70‑1 GGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTC < 1:392941/70‑1 GGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTC < 1:3927447/70‑1 GACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTC < 1:2181857/69‑1 TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGct < 1:4491187/66‑3 TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGct < 1:3238123/66‑3 TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGct < 1:1426895/66‑3 TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCG > 1:654568/1‑70 TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCA < 1:1404501/42‑1 TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCA < 1:227637/42‑1 TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCA < 1:4999607/42‑1 TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCA < 1:2138734/42‑1 TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCA < 1:4266082/42‑1 TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCA < 1:3909700/42‑1 TACAACTCAACTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGct < 1:3581316/66‑3 ACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGc > 1:3719707/1‑69 ACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGc > 1:3647265/1‑69 CAACTCAAGTCTGACATAAATGCCCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAA > 1:170939/1‑71 CAACTCAAGTCTGACATAAATGCCCGCTATGAGCACTGCAATTACACGCCAGATAGTTCTCGCTACCGCAA > 1:3698407/1‑71 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGca > 1:3203720/1‑68 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAA > 1:2740899/1‑71 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAA > 1:114081/1‑71 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAA > 1:1104171/1‑71 CTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTA < 1:4995577/62‑1 CTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTA < 1:4265986/62‑1 CTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTA < 1:1846897/62‑1 CTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTA < 1:1209634/62‑1 ||||||||||| GATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/70121‑70061‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAA > W3110S.gb/236044‑236109 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |