| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 274373 | NA (NA) | 70 (1.200) | 16/100 | NT | 100% | intergenic (‑32/‑176) | insH/mmuP | IS5 transposase and trans‑activator/predicted S‑methylmethionine transporter |
| ? | W3110S.gb | 576000 = | 0 (0.000) | pseudogene (109/1128 nt) | nmpC | DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin | |||||
Only 100 of 176 total aligned reads displayed.
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/274304‑274373‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGTACTGATGCAGCTACAGCAG‑AAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAAC > W3110S.gb/576000‑576068 ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:1936621/1‑71ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:30374/1‑71ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:3990422/71‑1ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:2144024/1‑71ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:4084128/71‑1ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:666922/71‑1ATGATGAACCCTGTTCTATGGCCCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:2200173/71‑1 TGATTAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:3891822/71‑1 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:759070/71‑1 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:3002314/71‑1 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:2292978/71‑1 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:4421395/71‑1 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:124515/71‑1 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:2629524/71‑1 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:344797/71‑1 GATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:1045037/70‑1 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG < 1:3935699/71‑1 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG > 1:4053630/1‑71 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG < 1:3154414/71‑1 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG > 1:1558561/1‑71 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA > 1:4277238/1‑70 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA < 1:4313671/70‑1 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA < 1:4381526/70‑1 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA > 1:130344/1‑70 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA < 1:2371021/70‑1 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA < 1:265213/70‑1 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG > 1:2086917/1‑70 GAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTA > 1:909287/1‑71 AACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAC > 1:476705/1‑71 AACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:4964519/66‑1 ACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAC < 1:4066519/70‑1 TTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:4804363/59‑1 TTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:4994354/59‑1 TTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:3956565/59‑1 TTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:4358706/59‑1 TTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:3632293/58‑1 GCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAG < 1:4665156/71‑1 CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAG‑A < 1:5366744/71‑1 CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAG‑A < 1:2091797/71‑1 CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAG‑A < 1:3096071/71‑1 GATTACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:4694597/1‑45 GATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:293112/1‑45 GATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:1161881/1‑45 ATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:4437895/45‑1 ATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:3757835/45‑1 ATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:3058009/45‑1 ATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:3339198/45‑1 ATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:1423487/45‑1 ATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:5222228/45‑1 TGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:926440/44‑1 TGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:162502/44‑1 TGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:4293735/44‑1 GACAAACATGATCTCATATCAGGGTCTTGTTCGCACCTTCCTTAG > 1:2839364/1‑45 GACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAG‑AAATTG > 1:3391806/1‑71 GACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAG‑AAATTG > 1:3181456/1‑71 GACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAG‑AAATTG > 1:618673/1‑71 GACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAG‑AAATTG > 1:4301537/1‑71 GACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG > 1:3698430/1‑45 GACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG > 1:761206/1‑45 GACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT > 1:3368628/1‑43 GACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT > 1:5516956/1‑43 GACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:5338738/1‑42 GACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:2519346/1‑42 GACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:1291709/1‑42 GACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:4465683/1‑42 GACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:330713/1‑42 AAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:1918570/40‑1 AAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:4776085/40‑1 AAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:5130587/40‑1 AAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:5012349/40‑1 ATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTA > 1:4745930/1‑40 ATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTA > 1:571360/1‑40 ATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTA > 1:5284533/1‑40 ATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTA > 1:963080/1‑40 ATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTA > 1:1388356/1‑40 ATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTA > 1:2182259/1‑40 ATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTA > 1:2605505/1‑40 ATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTA > 1:3399165/1‑40 ATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTA > 1:3572149/1‑40 TGATCTCATATCTGGGACTTGTTCGCACCTTCCTT < 1:4262245/35‑1 TATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAG‑AA < 1:1761099/51‑1 GGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAAATTGCCACTGTTAATTTTTTCATC > 1:1484703/1‑71 GGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAG‑AAATTGCCACTGTTAATTTTTTCATCG > 1:1050043/1‑71 GGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAG‑AAATTGCCACTGTTAATTTTTTCATCG > 1:3246989/1‑71 GGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAG‑AAATTGCCACTGTTAATTTTTTCATCG > 1:4193363/1‑71 GGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAG‑AAATTGCCACTGTTAATTTTTTCATCGT < 1:4288404/71‑1 GGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAG‑AAATTGCCACTGTTAATTTTTTCATCGT < 1:4914026/71‑1 TTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAG‑A < 1:1001562/40‑1 TTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAG‑A < 1:2782989/40‑1 TTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAG‑A < 1:1227700/40‑1 TTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAG‑A < 1:722787/40‑1 TTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAG‑A < 1:2003008/40‑1 GTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAG‑AAATTGCCACTGTTAATTTTTTCATCGTGAGCCC > 1:1791199/1‑71 GTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAG‑AAATTGCCACTGTTAATTTTTTCAT > 1:3797772/1‑62 GTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAG‑AAATTGCCACTGTTAATTTTTTCAT > 1:4985457/1‑62 GTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAG‑AAATTGCCACTGTTAATTTTTTAATCGTGAGCCC > 1:628705/1‑71 TTCGCACCTTCCTTAGTACTGATGCAGCTACAGCA > 1:2092438/1‑35 TTCGCACCTTCCTTAGTACTGATGCAGCTACAGCA > 1:1015020/1‑35 ACCTTCCTTAGTACTGATGCAGCTACAGCAG‑AAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTT > 1:2285890/1‑71 CCTTAGTACTGATGCAGCTACAGCAG‑AAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAAC > 1:4014124/1‑71 ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/274304‑274373‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGTACTGATGCAGCTACAGCAG‑AAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAAC > W3110S.gb/576000‑576068 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |