| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2172308 = | NA (NA) | 103 (1.800) | 24/98 | NT | 100% | pseudogene (1563/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | W3110S.gb | = 3920281 | 0 (0.000) | coding (88/213 nt) | cspA | major cold shock protein | |||||
Only 100 of 120 total aligned reads displayed.
GAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/2172370‑2172308‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGTCCTT < W3110S.gb/3920281‑3920211 GAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCG > 1:3107233/1‑70 AGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTA < 1:2422258/71‑1 AGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTA < 1:1192339/71‑1 AGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTA < 1:4581862/71‑1 AGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTA < 1:1284108/71‑1 AGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTA < 1:2442149/71‑1 AGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTA < 1:1361053/71‑1 CTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTC > 1:4616003/1‑71 CTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTC > 1:1957891/1‑71 CTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTC > 1:2826869/1‑71 ACTGTGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTG < 1:4565648/70‑1 ACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGC > 1:2417055/1‑71 ACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGC > 1:274874/1‑71 ACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGC > 1:4324228/1‑71 CTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCT < 1:4332112/71‑1 CTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCT < 1:4400693/71‑1 CTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGC > 1:3048525/1‑70 CTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGC > 1:805964/1‑70 AGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATC > 1:3495351/1‑71 TTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGATATC > 1:4929821/1‑66 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTAC > 1:3131598/1‑51 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTAC > 1:3313450/1‑51 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTAC > 1:53731/1‑51 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTAC > 1:5150263/1‑51 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTAC > 1:4177246/1‑51 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTAC > 1:1208211/1‑51 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTAC > 1:2781233/1‑51 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTAC > 1:1329311/1‑51 ACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAAC < 1:322664/70‑1 ACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAAC < 1:2207556/70‑1 ACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAAC < 1:403626/70‑1 TTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGAT < 1:2116527/67‑1 TTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGAT < 1:414825/67‑1 TTAGCCGCGTGTCCACTATT‑CTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGAT < 1:5416910/66‑1 TAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGA < 1:2746730/61‑1 TAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGA < 1:4410975/61‑1 TAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGA < 1:2446360/61‑1 TAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGA < 1:5252241/61‑1 TAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGA < 1:3996743/61‑1 TAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGA < 1:3940360/61‑1 TAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGA < 1:3835557/61‑1 GCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAAC > 1:442300/1‑61 GCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAAC > 1:4304690/1‑61 GCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAAC > 1:46359/1‑61 GCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAAC > 1:801274/1‑61 GCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAAC > 1:4106656/1‑61 GCCGCGTGTCAACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAAC > 1:3889472/1‑61 CGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATC < 1:4308166/51‑1 GTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATC < 1:686296/50‑1 TGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAGCGATGGTTACAAATCTC < 1:336546/71‑1 CTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGA < 1:5558480/47‑1 ATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTA < 1:4082081/55‑1 ATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTA < 1:2199032/55‑1 ATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTA < 1:2515577/55‑1 ATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTA < 1:3042486/55‑1 ATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGA > 1:1646792/1‑49 ATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGA > 1:4022862/1‑49 ATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGA > 1:487747/1‑49 ATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGA > 1:4927636/1‑49 ATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACG > 1:1444927/1‑48 TTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAG < 1:4307942/71‑1 TTGCTGGGAAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAG < 1:5218452/71‑1 TGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAG < 1:3825757/70‑1 GCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGT > 1:549734/1‑71 GCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGT > 1:2626399/1‑71 GCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGT > 1:126390/1‑71 GCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGT > 1:2008717/1‑71 GCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGT > 1:2733164/1‑71 GCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAAT > 1:1704932/1‑57 GCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAAT > 1:445469/1‑57 GCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAAT > 1:3403640/1‑57 GGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACTATGGTTACAAATCTCTGGACGAAGGT < 1:2079288/68‑1 GGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAA < 1:2743223/51‑1 GGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAA < 1:2176806/51‑1 GGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAA < 1:2830801/51‑1 GGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAA < 1:710562/51‑1 GTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAA < 1:439029/71‑1 GTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAA < 1:177835/71‑1 GTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAA < 1:1440905/71‑1 GTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAA < 1:5590127/71‑1 AGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGT > 1:312184/1‑71 AGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGT > 1:2056670/1‑71 AGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGT > 1:1982565/1‑71 AGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGT > 1:2132231/1‑71 AGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGT > 1:4877987/1‑71 AGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGT > 1:4149045/1‑71 GATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTG < 1:286270/71‑1 GATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTG < 1:2983446/71‑1 TCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAA > 1:1284138/1‑66 TCAGTGTTCGTACACTTCTCTGCTATCCAGAACGAT > 1:492311/1‑36 TCAGTGTTCGTACACTTCTCTGCTATCCAGAACGAT > 1:4555393/1‑36 TCAGTGTTCGTACACTTCTCTGCTATCCAGAACGAT > 1:1126574/1‑36 TCAGTGTTCGTACACTTCTCTGCTATACAGAACGAT > 1:1081491/1‑36 CAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGTCC > 1:4197791/1‑71 CAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGTCC > 1:413793/1‑71 CAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGTCC > 1:761115/1‑71 CAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGTCC > 1:3243527/1‑71 AGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAG < 1:5212089/56‑1 GTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGTCCTT < 1:1188852/71‑1 GTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTA < 1:5322616/38‑1 GAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/2172370‑2172308‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGTCCTT < W3110S.gb/3920281‑3920211 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |