| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | W3110S.gb | 2,176,983 | Δ1,199 bp | 100% | [gatA]–[gatA] | [gatA], insH, [gatA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | W3110S.gb | 2176983–2178178 | 2178181 | 4–1199 | 72 [0] | [0] 73 | [gatA]–[gatA] | [gatA],insH,[gatA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2176982 | 0 (0.000) | 69 (1.320) | 14/90 | NT | 100% | coding (71/321 nt) | gatA | galactitol‑specific enzyme IIA component of PTS |
| ? | W3110S.gb | 2178182 = | 0 (0.000) | coding (202/315 nt) | gatA | galactitol‑specific enzyme IIA component of PTS | |||||
TCGTTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2176910‑2176982‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCT > W3110S.gb/2178182‑2178249 TCGTTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACT > 1:2145112/1‑70TCGTTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACT > 1:819263/1‑70TCGTTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACT > 1:2271099/1‑70TCGTTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACT > 1:4592836/1‑70 ATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCG > 1:1987471/1‑71 ATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCG > 1:567276/1‑71 GCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGAC > 1:3748695/1‑50 GCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGAC > 1:923226/1‑50 TGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAA > 1:1118790/1‑63 TGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAA > 1:476385/1‑63 TGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAA > 1:1357517/1‑63 TGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAA > 1:1334424/1‑63 TGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAA > 1:1851558/1‑63 AACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTG > 1:3835586/1‑71 AACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTG > 1:4267797/1‑71 AACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTG > 1:3718090/1‑71 AACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTG > 1:5421624/1‑71 AACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTG > 1:2148863/1‑71 AACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTG > 1:1229480/1‑71 AACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTG > 1:5569978/1‑71 AACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTG > 1:5476896/1‑71 AACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATT > 1:5242912/1‑70 AACTTTATTTGTTGGCCTTAAC‑‑ATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGC < 1:608043/70‑1 AACTTTATTTGTTGGCCTTAAC‑‑ATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGC < 1:594151/70‑1 ACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGC < 1:807121/71‑1 ACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGC < 1:4699032/71‑1 ACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGC < 1:2585799/71‑1 TTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAA > 1:1485239/1‑70 TATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAA < 1:3462973/69‑1 TATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAA > 1:663470/1‑69 TATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAA < 1:3087301/69‑1 TATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAA < 1:4995793/69‑1 TATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAA > 1:519754/1‑69 TATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAA > 1:2236214/1‑69 TATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAA < 1:2173172/69‑1 TATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTG > 1:1547772/1‑66 TATTTGTTGGCCTTAACAGATAAATGGATGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAA > 1:2511758/1‑69 ATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATA < 1:4751203/70‑1 TTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGC > 1:1687856/1‑71 GTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGT < 1:3880070/70‑1 GTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGT < 1:2461556/70‑1 TTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCAC < 1:4359232/48‑1 TTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCAC < 1:3515112/48‑1 TTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCAC < 1:1282447/48‑1 TTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCAC < 1:1410165/48‑1 TTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCAC < 1:1486694/48‑1 TTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCAC < 1:1683359/48‑1 GGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAA > 1:3858445/1‑48 GGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAA > 1:1279598/1‑48 GGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAA > 1:1642475/1‑48 GGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAA > 1:1822972/1‑48 GGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAA > 1:5049521/1‑48 GGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAA > 1:312532/1‑48 GGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAA > 1:3875451/1‑48 GGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAA > 1:3373362/1‑48 TTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCAC < 1:924643/42‑1 TTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCAC < 1:3385387/42‑1 TTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCAC < 1:2607096/42‑1 TTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCAC < 1:1662465/42‑1 TTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCAC < 1:2240433/42‑1 TAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATag > 1:2065353/1‑44 TAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTA > 1:926054/1‑70 TAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTA > 1:370402/1‑70 TAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTA > 1:4102173/1‑70 TAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTA > 1:5479956/1‑70 TAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTA > 1:238731/1‑70 TAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTA > 1:489665/1‑70 TAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTA > 1:2906255/1‑70 TAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTA > 1:465168/1‑70 TAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTA > 1:2380024/1‑43 TAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTA > 1:5533573/1‑43 TAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTA > 1:4425889/1‑43 TAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTA > 1:3168515/1‑43 TAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTA > 1:2693797/1‑43 GCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCC > 1:5165442/1‑67 ACGACTTAGCATGAATCGCCTCACAATGCGGTATTGC < 1:4516647/37‑1 AGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCT > 1:4678829/1‑70 AGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTC < 1:3023025/69‑1 TCGTTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2176910‑2176982‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCT > W3110S.gb/2178182‑2178249 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |