| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | W3110S.gb | 3,742,938 | Δ1,336 bp | 100% | insD–insC | insD, insC | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | W3110S.gb | 3742938–3744266 | 3744273 | 8–1336 | 133 [0] | [0] 129 | insD–insC | insD,insC |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 3742937 | 0 (0.000) | 82 (1.680) | 21/84 | NT | 100% | intergenic (‑123/+9) | yieE/insD | predicted phosphopantetheinyl transferase/IS2 element protein |
| ? | W3110S.gb | 3744274 = | 0 (0.000) | intergenic (‑100/+21) | insC/yidZ | IS2 element protein/predicted DNA‑binding transcriptional regulator | |||||
Only 100 of 148 total aligned reads displayed.
ATGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/3742861‑3742937‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACG > W3110S.gb/3744274‑3744343 ATGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGA < 1:1567060/71‑1 TAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCG > 1:5214347/1‑71 TAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCG > 1:2999157/1‑71 TAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTC > 1:4666804/1‑70 TAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAA > 1:4420846/1‑63 TAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAA > 1:4320355/1‑63 AAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCG > 1:136430/1‑71 AAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCG > 1:3614105/1‑71 AAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGG > 1:5468005/1‑65 AAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGG > 1:5009072/1‑65 AAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGG > 1:1706038/1‑65 AAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTG > 1:5053152/1‑64 GCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTT < 1:2088492/71‑1 CGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTT < 1:2600781/71‑1 GGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTT > 1:99427/1‑70 GGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTT > 1:2069139/1‑70 GGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTT > 1:1519690/1‑70 AAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGT > 1:3798366/1‑59 AAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGT > 1:3696571/1‑59 AAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGT > 1:2827316/1‑59 AAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGT > 1:4745284/1‑59 TTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAA > 1:22291/1‑48 CGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAA > 1:2008628/1‑45 CGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAA > 1:5281934/1‑45 CGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAA > 1:4111030/1‑45 TTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTA < 1:3503485/71‑1 TTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTA < 1:5298209/71‑1 TCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAA > 1:45900/1‑42 CAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATG > 1:4917973/1‑71 CAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATG > 1:4802335/1‑71 CAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATG > 1:3499139/1‑71 CAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATG > 1:3945437/1‑71 AAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCAT < 1:1324299/52‑1 AAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCAT < 1:442471/52‑1 AAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCAT < 1:4686515/52‑1 GCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGA > 1:3134124/1‑71 CTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTT < 1:4312309/46‑1 CTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTT < 1:1948576/46‑1 CTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTT < 1:5005650/46‑1 CTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTT < 1:3409541/46‑1 TTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCAT < 1:1433296/48‑1 TTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCAT < 1:773695/48‑1 TATTACAACTTTTTTACATTTTATTGTGAAATTGGTTCGCGTTTCATACGATTCGGTTATGCCATCGACGC > 1:2427447/1‑71 TATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGC > 1:3072003/1‑71 TACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGT > 1:1912512/1‑70 TACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGT > 1:1031415/1‑70 TACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATA > 1:516528/1‑45 TACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATA > 1:4212102/1‑45 TACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATA > 1:567194/1‑45 TACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATA > 1:1495277/1‑45 TACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATA > 1:3376877/1‑45 ACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTA > 1:2022470/1‑70 AACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC < 1:1918646/43‑1 AACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC < 1:230426/43‑1 AACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC < 1:4104967/43‑1 CTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGA > 1:1012274/1‑43 CTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGA > 1:5538264/1‑43 CTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGA > 1:1770653/1‑43 TTTTTACATTTTATTGTGATATTGGGTCGCGTTTCATACGATTCGGTTATGCCA > 1:4224827/1‑54 TTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTT > 1:4881364/1‑71 TTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGCCGCGTAAAGGTTTT > 1:2844786/1‑70 CATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATG < 1:3906520/71‑1 CATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATG < 1:3512787/71‑1 CATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATG < 1:3777811/71‑1 CATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATG < 1:1149046/71‑1 CATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAAT < 1:3574203/70‑1 CATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAAT < 1:5418350/70‑1 CATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAAT < 1:5146990/70‑1 CATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAA < 1:583649/69‑1 TTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGT < 1:4474546/38‑1 TTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGA > 1:4485998/1‑48 TTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGA > 1:2238133/1‑48 TTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGA > 1:82534/1‑48 TTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGA > 1:2416732/1‑48 TTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGA > 1:1179220/1‑48 TTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTAT > 1:1185677/1‑40 ATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCC > 1:2139214/1‑71 ATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCC > 1:3145479/1‑71 ATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCC > 1:2778349/1‑71 GTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCG > 1:1300388/1‑70 GTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCG > 1:2325616/1‑70 TGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGTGTAAAGGTTTTTAATGGTTTCCCGT < 1:4900651/70‑1 TGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGT < 1:5409500/70‑1 TGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGT < 1:4590326/70‑1 TGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGT < 1:2170465/70‑1 TGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGT < 1:4233240/70‑1 TGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGT < 1:1591295/70‑1 TGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGT < 1:3342845/70‑1 TGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGT < 1:3214722/70‑1 TGAAATTGGGTCGCGTTTCATACCATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGT < 1:2132989/70‑1 ATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCA < 1:895147/71‑1 ATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACC > 1:3209377/1‑70 ATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACC > 1:3435005/1‑70 ATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAAT > 1:1971167/1‑56 ATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAAT > 1:631833/1‑56 ATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAAT > 1:985816/1‑56 ATTGGGTCGCGTTTCATAAGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAAT > 1:4744604/1‑56 GGGTCTCGTTTCATACTATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAA < 1:3632341/52‑1 GGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACG < 1:522660/71‑1 GGTCGCGTTTCATACGAATCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGT < 1:4235886/62‑1 ATGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/3742861‑3742937‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACG > W3110S.gb/3744274‑3744343 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |