New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	205097 =	22 (0.970)	8 (0.420) +TTATAACA	7/82	NT	37.5%	intergenic (+8/‑29)	rnhB/dnaE	ribonuclease HII, degrades RNA of DNA‑RNA hybrids/DNA polymerase III alpha subunit
	?	W3110S.gb	= 467579	10 (0.440)					intergenic (+125/‑28)	cof/ybaO	thiamin pyrimidine pyrophosphate hydrolase/predicted DNA‑binding transcriptional regulator

TTCAGATTCCGGTTTACTTAATCTCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/205124‑205097 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTAATTTTATTTT  <  W3110S.gb/467579‑467565                             ||||||||                TTCAGATTCCGGTTTACTTAATCTCGACTTATAACATTTTAATTTTA      <  1:1142725/47‑1   CAGATTCCGGTTTACTTAATCTCGACTTATAACATTTTAATTTT       <  1:1120645/44‑1      ATTCCGGTTTACTTAATCTCGACTTATAACATTTTAATTT        <  1:1605862/40‑1      ATTCCGGTTTACTTAATCTCGACTTATAACATTTT             <  1:1372222/35‑1       TTCCGGTTTACTTAATCTCGACTTATAACATTTTAATTTTATT    >  1:189965/1‑43        TCCGGTTTACTTAATCTCGACTTATAACATTTTAATTTTA      >  1:1139437/1‑40        TCCGGTTTACTTAATCTCGACTTATAACATTTTAATTTTA      >  1:1228202/1‑40          CGGTTTACTTAATCTCGACTTATAACATTTTAATTTTATTTT  >  1:1889869/1‑42               TACTTAATCTCGACTTATAACATTTTAATTTTATT    >  1:430927/1‑35                             ||||||||                TTCAGATTCCGGTTTACTTAATCTCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/205124‑205097 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTAATTTTATTTT  <  W3110S.gb/467579‑467565

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.