New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb = 23679817 (0.750)5 (0.500)
+TTTAATATCAGTAAACCGGACATAACC		 4/44 NT 34.7% coding (732/732 nt) dnaQ DNA polymerase III epsilon subunit
?W3110S.gb 4124504 = 26 (1.150)intergenic (+106/‑1) damX/dam hypothetical protein/DNA adenine methylase

TGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/236732‑236798
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAAC  >  W3110S.gb/4124504‑4124571
                                                                   |||||||||||||||||||||||||||                                                                    
TGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTT                                                                                              >  1:1339961/1‑70
     CTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATAT                                                                                         >  1:285001/1‑70
     CTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATAT                                                                                         <  1:1690243/70‑1
        ATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTT                                                                                              <  1:175155/62‑1
              CCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCG                                                                               <  1:508047/71‑1
                CGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGACTCTGGCGAGCATAATTTAATATCAGTAAACCGGA                                                                             <  1:290518/71‑1
                  TCTCTATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAA                                                                                   <  1:1896695/63‑1
                  TCTCGATCTGGTGCATAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAT                                                                                                >  1:125801/1‑50
                  TCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAA                                                                                   <  1:1098209/63‑1
                        TCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACC                                                                      >  1:340619/1‑70
                         CTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAA                                                                                  >  1:981668/1‑57
                         CTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAA                                                                                  >  1:431544/1‑57
                             TGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAG                                                                                      <  1:762334/49‑1
                                   AGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAA                                                          >  1:1061045/1‑71
                                      AAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAA                                                                                  <  1:1864898/44‑1
                                               GTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTT                                              <  1:807046/71‑1
                                                 TGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTG                                             >  1:112919/1‑70
                                                 TGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCT                                                   >  1:45612/1‑64
                                                          CGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAG                                   <  1:1709/71‑1
                                                              CATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCT                                                   >  1:1695694/1‑51
                                                                 AATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGC                              <  1:1831549/69‑1
                                                                   TTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCA                                    >  1:1670713/1‑61
                                                                          TCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTG                                             <  1:1512666/45‑1
                                                                                AACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGA             >  1:1424651/1‑71
                                                                                    GGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCA                             <  1:920220/51‑1
                                                                                        ATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATT      >  1:1444317/1‑70
                                                                                        ATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGG                                       <  1:911316/37‑1
                                                                                         TAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAG                                   <  1:2044602/40‑1
                                                                                          AACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGAGATTAAA   >  1:44240/1‑71
                                                                                           ACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGG                                >  1:1972639/1‑41
                                                                                           ACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCA                                    >  1:1691933/1‑37
                                                                                            CCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAAC  >  1:1880306/1‑70
                                                                   |||||||||||||||||||||||||||                                                                    
TGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/236732‑236798
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAAC  >  W3110S.gb/4124504‑4124571

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.