| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 274373 | NA (NA) | 38 (1.670) | 24/98 | NT | 100% | intergenic (‑32/‑176) | insH/mmuP | IS5 transposase and trans‑activator/predicted S‑methylmethionine transporter |
| ? | W3110S.gb | 576000 = | 0 (0.000) | pseudogene (109/1128 nt) | nmpC | DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin | |||||
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/274304‑274373‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAACT > W3110S.gb/576000‑576069 ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:1040896/71‑1ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:1553589/1‑71ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:758640/1‑71ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:880500/1‑71ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:1765387/1‑71ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:1344394/1‑71ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:1918997/1‑71ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:1285675/71‑1ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:49997/1‑71ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:2164860/1‑71ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:1061983/1‑71ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:1091787/1‑71ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:409761/1‑71ATGATGAACACTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:1448400/1‑71 TGATGAGCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:246364/71‑1 TGATGAGCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:248997/71‑1 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:1288081/71‑1 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:975507/71‑1 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:271734/71‑1 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:1026775/71‑1 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:1175593/70‑1 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:2040973/70‑1 GATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT > 1:568115/1‑70 GATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:684920/1‑69 GATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:1302273/1‑69 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG > 1:748029/1‑71 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG < 1:1854021/71‑1 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG < 1:28758/71‑1 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG > 1:1623697/1‑71 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG < 1:808711/71‑1 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG < 1:1615673/71‑1 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA < 1:66172/70‑1 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA < 1:1177767/70‑1 ATGAACACTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG > 1:1897/1‑71 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA < 1:504739/69‑1 GAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGT < 1:1938530/70‑1 CCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTG < 1:1751475/71‑1 CTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGAT < 1:5629/71‑1 TGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG < 1:1476973/63‑1 CTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA > 1:2098290/1‑58 CTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA > 1:1698196/1‑58 CTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:1225879/56‑1 TATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCTCACCTTCCTT < 1:909095/56‑1 TGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG < 1:530946/56‑1 CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGA < 1:904933/71‑1 CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGA < 1:1207644/71‑1 CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:1145641/48‑1 AGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAA < 1:1075607/71‑1 GATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAA > 1:1310064/1‑71 ATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAA < 1:529325/70‑1 ATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA > 1:1374011/1‑46 GACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGA > 1:328478/1‑51 GACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACT > 1:1444183/1‑49 ACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA > 1:812769/1‑43 AAACATGATCTCATATCAGGGACTTGTTCTCACCTTCCTTAG > 1:1440967/1‑42 ACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACT > 1:546116/1‑71 ACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACT > 1:1700429/1‑71 ACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAA > 1:1797098/1‑63 GATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTT > 1:1211356/1‑70 ATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTA < 1:882806/70‑1 CTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATT > 1:978749/1‑71 TCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGA < 1:535885/53‑1 TCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGA < 1:1988130/53‑1 TCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAG < 1:1262230/43‑1 CATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATT > 1:2030871/1‑69 ATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGA > 1:1805327/1‑36 TATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC < 1:520253/56‑1 TCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCA < 1:1088944/71‑1 TCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCA > 1:1611014/1‑71 TCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCA > 1:2112784/1‑56 TCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATT < 1:1395984/52‑1 ACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGA < 1:780959/71‑1 ACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCA > 1:1227338/1‑50 TTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTT > 1:230480/1‑59 TTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC < 1:1888069/46‑1 TTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC < 1:21805/46‑1 TTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGA < 1:202049/40‑1 TTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAG > 1:808429/1‑39 TGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAA < 1:2050358/40‑1 GTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCC > 1:1687486/1‑71 GTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCC > 1:2102554/1‑71 GTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCC > 1:288786/1‑71 TTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAAT > 1:1869979/1‑40 CGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAA > 1:82110/1‑36 CTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTG < 1:1464203/71‑1 TTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTG > 1:1615698/1‑70 CTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAACT < 1:1933943/71‑1 CTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAACT < 1:1113107/71‑1 ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/274304‑274373‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAACT > W3110S.gb/576000‑576069 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |