| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2018571 = | 3 (0.130) | 23 (1.080) | 19/92 | NT | 89.1% | coding (567/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | 2519723 = | NA (NA) | intergenic (+33/‑54) | nupC/insL | nucleoside (except guanosine) transporter/predicted transposase | |||||
CGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/2018641‑2018571‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCAC > W3110S.gb/2519723‑2519791 CGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTAAAGCCGCCAGGATGGAGGGTGGGATCGCCC < 1:1476367/71‑1 CACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCAT > 1:497062/1‑70 GGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGC > 1:1336976/1‑70 TCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGACAGGATGGAGGGTGGGATCGCCCATAAGCGCTA < 1:258542/70‑1 AGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTT < 1:1335915/71‑1 GCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGG > 1:1164142/1‑71 CCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGT < 1:72094/71‑1 TCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAA > 1:970201/1‑59 CATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTG > 1:1985391/1‑71 CATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTG > 1:547909/1‑71 CATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGT < 1:2070858/70‑1 GCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATT < 1:723096/71‑1 GAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACG < 1:69517/71‑1 GACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCC > 1:1422996/1‑71 TACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGT > 1:634742/1‑52 CAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTAT < 1:304179/58‑1 CGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT < 1:126056/71‑1 TGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCC < 1:1110903/71‑1 GAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCG < 1:2015244/70‑1 GAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCG < 1:448084/70‑1 GGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTTGTATTACGCCTGATATG < 1:559138/54‑1 GGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATG < 1:556607/54‑1 GGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT < 1:462266/55‑1 GGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAA > 1:144291/1‑68 GGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCT < 1:68164/44‑1 CGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTC > 1:2047205/1‑70 CCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCA > 1:1397042/1‑71 CCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCA > 1:1763562/1‑71 CCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATA > 1:2003718/1‑42 CCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCAC > 1:1158530/1‑71 CCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACT < 1:2054826/66‑1 CCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAA > 1:1849478/1‑61 CCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAA > 1:2187489/1‑61 CCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAA > 1:1336331/1‑61 CCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCAGATAAGAATTAACG > 1:2056327/1‑51 CATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATAT < 1:405635/41‑1 CATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATAT < 1:1070916/41‑1 CGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/2018641‑2018571‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCAC > W3110S.gb/2519723‑2519791 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |