New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	minE	= 1881475	51 (0.740)	4 (0.060)	3/94	NT	7.3%	coding (1659/2235 nt)	relA	(p)ppGpp synthetase I/GTP pyrophosphokinase
	?	minE	= 1881494	56 (0.900)					coding (1640/2235 nt)	relA	(p)ppGpp synthetase I/GTP pyrophosphokinase

CAGCGCGGCGGCGTCCTGCTCTTCGGCACTCGGCTTATTAAATTGCGATTGCAGGAAGTTCACCATCTGATTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  minE/1881403‑1881475 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gattgGTGGCGGGGATATCCGTCTCAATCAGATGGTGAACTTCCTGCAATCGCAATTTAATAAGCCGAGTGCCG  <  minE/1881494‑1881426                                                                                                                                                CAGCGCGGCGGCGTCCTGCTCTTCGGCACTCGGCTTATTAAATTGCGATTGCAGGAAGTTCACCATCTGA                                                                          <  1:36678/70‑1                  GCTCTTCGGCACTCGGCTTATTAAATTGCGATTGCAGGAAGTTCACCATCTGATTGGTGGCGGGGATATCC                                                        >  1:373766/1‑71                               CGGCTTATTAAATTGCGATTGCAGGAAGTTCACCATCTGATTGGTGGCGGGGATATCCGTCTCAAT                                                >  1:1961226/1‑66                               CGGCTTATTAAATTGCGATTGCAGGAAGTTCACCATCTGATTGGTGGCGGGGATATCCGTCTCAAT                                                >  1:3490429/1‑66                                GGCTTATTAAATTGCGATTGCAGGAAGTTCACCATCTGATTGGTGGCGGGGATATCCGTCTCAATC                                               >  1:2301837/1‑66                                                                     GATTGGTGGC‑‑GGATATCCGTCTCAATCAGATGGTGAACT                                   <  1:1557168/39‑1                                                                         GGTGGCGGGGATATCCGTCTCAATCAGATGGTGAACTTCCTGCAATCGCAATTTAATAAGCCGAGTGCCG  <  1:1752131/70‑1                                                                         GGTGGCGGGGATATCCGTCTCAATCAGATGGTGAACTTCCTGCAATCGCAATTTAATAAGCCGAGTGCCG  >  1:2274317/1‑70                                                                         GGTGGCGGGGATATCCGTCTCAATCAGATGGTGAACTTCCTGCAATCGCAATTTAATAAGCCG         >  1:571692/1‑63                                                                         GGTGGCGGGGATATCCGTCTCAATCAGATGGTGAACTTCCTGCAATCGCAATTT                  <  1:3227970/54‑1                                                                                                                                                CAGCGCGGCGGCGTCCTGCTCTTCGGCACTCGGCTTATTAAATTGCGATTGCAGGAAGTTCACCATCTGATTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  minE/1881403‑1881475 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gattgGTGGCGGGGATATCCGTCTCAATCAGATGGTGAACTTCCTGCAATCGCAATTTAATAAGCCGAGTGCCG  <  minE/1881494‑1881426

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.