| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 445266 | NA (NA) | 3 (0.010) | 3/268 | NT | NA | noncoding (67/87 nt) | REP40 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP40 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 445281 | NA (NA) | noncoding (82/87 nt) | REP40 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP40 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
TGGCGATGGTACGTGGTGGCGATCTCGGTCAGCCGTTCCAGTTCAAAAACTTCCGCGATTAATCGCGACTATGTGCGTTTTGTTCATGTCAGATGCGGCATGAACGCCTGATTCGGCCTACAAAGGTTTGTAATTCAGAAACTTTGTAGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/445113‑445266‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgCTGCGCTACGCTTATCAGGCCTACAAAGTTTCTGAATTACAAACCTTTGTAGGCCGAATCAGGCGTTCATGCCGCATCTGACATGAACAAAACGCACATAGTCGCGATTAATCGCGGAAGTTTTTGAACTGGAACGGCTGACCGAGATC < NC_000913/445281‑445133 TGGCGATGGTACGTGGTGGCGATCTCGGTCAGCCGTTCCAGTTCAAAAACTTCCGCGATTAATCGCGACTATGTGCGTTTTGTTCATGTCAGATGCGGCATGAACGCCTGATTCGGCCTACAAAGTTTCTGAATTACAAACCTTTGTAGG < 2:1522672/150‑1TGGCGATGGTACGTGGTGGCGATCTCGGTCAGCCGTTCCAGTTCAAAAACTTCCGCGATTAATCGCGACTATGTGCGTTTTGTTCATGTCAGATGCGGCATGAACGCCTGATTCGGCCTACAAAGTTTCTGAATTACAAACCTTTGTAGG < 2:1522653/150‑1TGGCGATGGTACGTGGTGGCGATCTCGGTCAGCCGTTCCAGTTCAAAAACTTCCGCGATTAATCGCGACTATGTGCGTTTTGTTCATGTCAGATGCGGCATGAACGCCTGATTCGGCCTACAAAGGTTTGTAATTCAGAAACTTTGTAGG > 1:1615814/1‑150TGGCGATGGTACGTGGTGGCGATCTCGGTCAGCCGTTCCAGTTCAAAAACTTCCGCGATTAATCGCGACTATGTGCGTTTTGTTCATGTCAGATGCGGCATGAACGCCTGATTCGGCCTACAAAGGTTTGTAATTCAGAAACTTTGTAGG < 1:2272750/150‑1TGGCGATGGTACGTGGTGGCGATCTCGGTCAGCCGTTCCAGTTCAAAAACTTCCGCGATTAATCGCGACTATGTGCGTTTTGTTCATGTCAGATGCGGCATGAACGCCTGATTCGGCCTACAAAGGTTTGTAATTCAGAAACTTTGTAGG > 1:4723811/1‑150 GGCGATGGTACGTGGTGGCGATCTCGGTCAGCCGTTCCAGTTCAAAAACTTCCGCTATTAATCGCGACTATGTGCGTTTTGTTCATGTCAGATGCGGCATGAACGCCTGATTCGGCCTACAAAGGTTTGTAATTCAGAAACTTTGTAGGC < 2:5464517/150‑1 GGCGATGGTACGTGGTGGCGATCTCGGTCAGCCGTTCCAGTTCAAAAACTTCCGCGATTAATCGCGACTATGTGCGTTTTGTTCATGTCAGATGCGGCATGAACGCCTGATTCGGCCTACAAAGGTTTGTAATTCAGAAACTTTGTAGGC < 2:2445980/150‑1 GGCGATGGTACGTGGTGGCGATCTCGGTCAGCCGTTCCAGTTCAAAAACTTCCGCGATTAATCGCGACTATGTGCGTTTTGTTCATGTCAGATGCGGCATGAACGCCTGATTCGGCCTACAAAGGTTTGTAATTCAGAAACTTTGTAGGC < 1:582144/150‑1 GGCGATGGTACGTGGTGGCGATCTCGGTCAGCCGTTCCAGTTCAAAAACTTCCGCGATTAATCGCGACTATGTGCGTTTTGTTCATGTCAGATGCGGCATGAACGCCTGATTCGGCCTACAAAGGTTTGTAATTCAGAAACTTTGTAGGC < 1:2393864/150‑1 GGCGATGGTACGTGGTGGCGATCTCGGTCAGCCGTTCCAGTTCAAAAACTTCCGCGATTAATCGCGACTATGTGCGTTTTGTTCATGTCAGATGCGGCATGAACGCCTGATTCGGCCTACAAAGGTTTGTAATTCAGAAACTTTGTAGGC < 2:2446014/150‑1 GGCGATGGTACGTGGTGGCGATCTCGGTCAGCCGTTCCAGTTCAAAAACTTCCGCGATTAATCGCGACTATGTGCGTTTTGTTCATGTCAGATGCGGCATGAACGCCTGATTCGGCCTACAAAGGTTTGTAATTCAGAAACTTTGTAGGC < 2:5498166/150‑1 GGCGATGGTACGTGGTGGCGATCTCGGTCAGCCGTTCCAGTTCAAAAACTTCCGCGATTAATCGCGACTATGTGCGTTTTGTTCATGTCAGATGCGGCATGAACGCCTGATTCGGCCTACAAAGGTTTGTAATTCAGAAACTTTGTAGGC < 1:5159430/150‑1 GGCGATGGTACGTGGTGGCGATCTCGGTCAGCCGTTCCAGTTCAAAAACTTCCGCGATTAATCGCGACTATGTGCGTTTTGTTCATGTCAGATGCGGCATGAACGCCTGATTCGGCCTACAAAGGTTTGTAATTCAGAAACTTTGTAGGC < 1:5159407/150‑1 CGATGGTACGTGGTGGCGATCTCGGTCAGCCGTTCCAGTTCAAAAACTTCCGCGATTAATCGCGACTATGTGCGTTTTGTTCATGTCAGATGCGGCATGAACGCCTGATTCGGCCTACAAAGGTTTGTAATTCAGAAACTTTGTAGGCCT > 2:245685/1‑150 CGATGGTACGTGGTGGCGATCTCGGTCAGCCGTTCCAGTTCAAAAACTTCCGCGATTAATCGCGACTATGTGCGTTTTGTTCATGTCAGATGCGGCATGAACGCCTGATTCGGCCTACAAAGGTTTGTAATTCAGAAACTTTGTAGGCCT > 1:606930/1‑150 CGATGGTACGTGGTGGCGATCTCGGTCAGCCGTTCCAGTTCAAAAACTTCCGCGATTAATCGCGACTATGTGCGTTTTGTTCATGTCAGATGCGGCATGAACGCCTGATTCGGCCTACAAAGGTTTGTAATTCAGAAACTTTGTAGGCCT > 1:3843141/1‑150 GATGGTACGTGGTGGCGATCTCGGTCAGCCGTTCCAGTTCAAAAACTTCCGCGATTAATCGCGACTATGTGCGTTTTGTTCATGTCAGATGCGGCATGAACGCCTGATTCGGCCTACAAAGGTTTGTAATTCAGAAACTTTGTAGGCCTG > 1:231828/1‑150 GATGGTACGTGGTGGCGATCTCGGTCAGCCGTTCCAGTTCAAAAACTTCCGCGATTAATCGCGACTATGTGCGTTTTGTTCATGTCAGATGCGGCATGAACGCCTGATTCGGCCTACAAAGGTTTGTAATTCAGAAACTTTGTAGGCCTG > 1:179947/1‑150 GATGGTACGTGGTGGCGATCTCGGTCAGCCGTTCCAGTTCAAAAACTTCCGCGATTAATCGCGACTATGTGCGTTTTGTTCATGTCAGATGCGGCATGAACGCCTGATTCGGCCTACAAAGGTTTGTAATTCAGAAACTTTGTAGGCCTG > 1:1735143/1‑150 TCGGTCAGCCGTTCCAGTTCAAAAACTTCCGCGATTAATCGCGACTATGTGCGTTTTGTTCATGTCAGATGCGGCATGAACGCCTGATTCGGCCTACAAAGGTTTGTAATTCAGAAACTTTGTAGGCCTGCTGCGCTACGCTTATCAGGC < 1:4459514/150‑1 TCGCGACTATGTGCGTTTTGTTCATGTCAGATGCGGCATGAACGCCTGATTCGGCCTACAAAGGTTTGTAATTCAGAAACTTTGTAGGCCTGCTGCGCTACGCTTATCAGGCCTAC < 2:2241277/116‑1 TCGCGACTATGTGCGTTTTGTTCATGTCAGATGCGGCATGAACGCCTGATTCGGCCTACAAAGGTTGGTAATTCAGAAACTTTGTAGGCCTGCTGCGCTACGCTTATCAGGCCTAC > 1:2241277/1‑116 GCCTGCTGCGCTACGCTTATCAGGCCTACAAAGTTTCTGAATTACAAACCTTTGTAGGCCGAATCAGGCGTTCATGCCGCATCTGACATGAACAAAACGCACATAGTCGCGATTAATCGCGGAAGTTTTTGAACTGGAACGGCTGACCGA < 1:497030/150‑1 tCTGCTGCGCTACGCTTATCAGGCCTACAAAGTTTCTGAATTACAAACCTTTGTAGGCCGAATCAGGCGTTCATGCCGCATCTGACATGAACAAAACGCACATAGTCGCGATTAATCGCGGAAGTTTTTGAACTGGAACGGCTGACCGAG < 2:1259934/149‑1 nCTGCTGCGCTACGCTTATCAGGCCTACAAAGTTTCTGAATTACAAACCTTTGTAGGCCGAATCAGGCGTTCATGCCGCATCTGACATGAACAAAACGCACCTAGTCGCGATTACTCGCGGAAGTTTTTGAACTGGACCGGCTGACCGAG > 1:1977176/2‑150 CCTGCTGCGCTACGCTTATCAGGCCTACAAAGTTTCTGAATTACAAACCTTTGTATGCCGAATCAGGCGTTCATGCCGCATCTGACATGAACAAAACGCACATAGTCGCGATAAATCGCGGAAGTTTTTGAACTGGAACGGCTGACCGAG > 1:5355454/1‑150 CCTGCTGCGCTACGCTTATCAGGCCTACAAAGTTTCTGAATTACAAACCTTTGTAGGCCGAATCAGGCGTTCATGCCGCATCTGACATGAACAAAACGCACATAGTCGCGATTAATCGCGGAAGTTTTTGAACTGGAACGGCTGccga < 2:3571435/148‑5 CCTGCTGCGCTACGCTTATCAGGCCTACAAAGTTTCTGAATTACAAACCTTTGTAGGCCGAATCAGGCGTTCATGCCGCATCTGACATGAACAAAACGCACATAGTCGCGATTAATCGCGGAAGTTTTTGAACTGGAACGGCTGccga > 1:3571435/1‑144 CCTGCTGCGCTACGCTTATCAGGCCTACAAAGTTTCTGAATTACAAACCTTTGTAGGCCGAATCAGGCGTTCATGCCGCATCTGACATGAACAAAACGCACATAGTCGCGATTAATCGCGGAAGTTTTTGAACTGGAACGGCTGACCGAG < 1:1218267/150‑1 CCTGCTGCGCTACGCTTATCAGGCCTACAAAGTTTCTGAATTACAAACCTTTGTAGGCCGAATCAGGCGTTCATGCCGCATCTGACATGAACAAAACGCACATAGTCGCGATTAATCGCGGAAGTTTTTGAACTGGAACGGCTGACCGAG > 2:379815/1‑150 TGCTGCGCTACGCTTATCAGGCCTACAAAGTTTCTGAATTACAAACCTTTGTAGGCCGAATCAGGCGTTCATGCCGCATCTGACATGAACAAAACGCACATAGTCGCGATTAATCGCGGAAGTTTTTGAACTGGAACGGCTGACCGAGAT > 2:4235649/1‑150 TGCTGCGCTACGCTTATCAGGCCTACAAAGTTTCTGAATTACAAACCTTTGTAGGCCGAATCAGGCGTTCATGCCGCATCTGACATGAACAAAACGCACATAGTCGCGATTAATCGCGGAAGTTTTTGAACTGGAACGGCTGACCGAGAT > 1:1590840/1‑150 TGCTGCGCTACGCTTATCAGGCCTACAAAGTTTCTGAATTACAAACCTTTGTAGGCCGAATCAGGCGTTCATGCCGCATCTGACATGAACAAAACGCACATAGTCGCGATTAATCGCGGAAGTTTTTGAACTGGAACGGCTGACCGAGAT < 2:1937006/150‑1 GCTGCGCTACGCTTATCAGGCCTACAAAGTTTCTGAATTACAAACCTTTGTAGGCCGAATCAGGCGTTCATGCCGCATCTGACATGAACAAAACGCACATAGTCGCGATTAATCGCGGAAGTTTTTGAACTGGAACGGCTGACCGAGATC < 2:3046657/150‑1 GCTGCGCTACGCTTATCAGGCCTACAAAGTTTCTGAATTACAAACCTTTGTAGGCCGAATCAGGCGTTCATGCCGCATCTGACATGAACAAAACGCACATAGTCGCGATTAATCGCGGAAGTTTTTGAACTGGAACGGCTGACCGAGATC < 2:2613107/150‑1 GCTGCGCTACGCTTATCAGGCCTACAAAGTTTCTGAATTACAAACCTTTGTAGGCCGAATCAGGCGTTCATGCCGCATCTGACATGAACAAAACGCACATAGTCGCGATTAATCGCGGAAGTTTTTGAACTGGAACGGCTGACCGAGATC > 1:5667372/1‑150 GCTGCGCGACGCTTATCAGGCCTACAAAGTTTCTGAATTACAAACCTTTGTAGGCCGAATCAGGCGTTCATGCCGCATCTGACATGAACAAAACGCACATAGTCGCGATTAATCGCGGAAGTTTTTGAACTGGAACGGCTGACCGAGATC < 2:1811488/150‑1 TGGCGATGGTACGTGGTGGCGATCTCGGTCAGCCGTTCCAGTTCAAAAACTTCCGCGATTAATCGCGACTATGTGCGTTTTGTTCATGTCAGATGCGGCATGAACGCCTGATTCGGCCTACAAAGGTTTGTAATTCAGAAACTTTGTAGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/445113‑445266‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgCTGCGCTACGCTTATCAGGCCTACAAAGTTTCTGAATTACAAACCTTTGTAGGCCGAATCAGGCGTTCATGCCGCATCTGACATGAACAAAACGCACATAGTCGCGATTAATCGCGGAAGTTTTTGAACTGGAACGGCTGACCGAGATC < NC_000913/445281‑445133 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |