New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2953091	66 (0.960)	6 (0.090)	5/264	NT	8.6%	coding (2913/3543 nt)	recB	exonuclease V (RecBCD complex), beta subunit
	?	NC_000913	= 2953105	65 (0.990)					coding (2899/3543 nt)	recB	exonuclease V (RecBCD complex), beta subunit

TCTCCACCTGTTTATTGCGGGCGGAAAGTTGACTCAGGCTTACGCCGGTTTCATTGAGAGGTGCCTGGAGGACAGCCGTGATCCACTCGGTCAATACCGGTTCCCACTGCGATTCAAAGCCGCCGAGTTCCAGTTTTTCCCGCACCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2952943‑2953091 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccagCCGGTTGACCCGAACTGGGTGCGGGAAAAACTGGAACTCGGCGGCTTTGAATCGCAGTGGGAACCGGTATTGACCGAGTGGATCACGGCTGTCCTCCAGGCACCTCTCAATGAAACCGGCGTAAGCCTGAGTCAACTTTCCGCCCGC  <  NC_000913/2953105‑2952959                                                                                                                                                                                                                                                                                                          TCTCCACCTGTTTATTGCGGGCGGAAAGTTGACTCAGGCTTACGCCGGTTTCATTGAGAGGTGCCTGGAGGACAGCCGTGATCCACTCGGTCAATACCGGTTCCCACTGCGATTCAAAGCCGCCGAGTTCCAGTTTTTCCCGCACCCAG                                                                                                                                                     >  2:162413/1‑149                     GCGGAAAGTTGACTCAGGCTTACGCCGGTTTCATTGAGAGGTGCCTGGAGGACAGCCGTGATCCACTCGGTCAATACCGGTTCCCACTGCGATTCAAAGCCGCCGAGTTCCAGTTTTTCCCGCACCCAGCCGGTTGACCCGAACTGGGT                                                                                                                                 <  1:635605/149‑1                        GAAAGTTGACTCAGGCTTACGCCGGTTTCATTGAGAGGTGCCAGGAGGACAGCCGTGATCCACTCGGTCAATACCGGTTCCCACTGCGATTCAAAGCCGCCGAGTTCCAGTTTTTCCCGCACCCAGCCGGTTGACCCGAACTGGGTGCG                                                                                                                              <  2:233500/149‑1                             TTGACTCAGGCTTACGCCGGTTTCATTGAGAGGTGCCTGGAGGACAGCCGTGATCCACTCGGTCAATACCGGTTCCCACTGCGATTCAAAGCCGCCGAGTTCCAGTTTTTCCCGCACCCAGCCGGTTGACCCGAACTGGGTGCG                                                                                                                              <  1:330499/144‑1                             TTGACTCAGGCTTACGCCGGTTTCATTGAGAGGTGCCTGGAGGACAGCCGTGATCCACTCGGTCAATACCGGTTCCCACTGCGATTCAAAGCCGCCGAGTTCCAGTTTTTCCCGCACCCAGCCGGTTGACCCGAACTGGGTGCG                                                                                                                              >  2:330499/1‑144                                  TCAGGCGTACGCCGGTTTCATTGACCGGTGCCTGGAGGACAGCCGTGATCCACTCGGTCAATACCGGTGCCCACTGCGATTCAAAGCCGCCGAGTTCCAGATTTTCCCGCACCCAGCCGGTTGACCCGAACTGGGTGCGGGAAAAACTG                                                                                                                    <  2:657595/149‑1                                   ccGGCTTCCGCCGGTTTCATTGATCGGTGCCTGGAGGACAGCCGTGATCCACGCGGGCAATACCGGTTCCCACTGCGATTCAACGCCGCCGAGTTCCAGTTTTTCCCGCACCCCGCCGGTTGACCCGAACTGGGTGCGGGAAAAACTGG                                                                                                                   <  2:1045807/147‑1                                                                                                                                            tttaACCCAGCCGGTTGACCCGAACTGCGTGCTTGAAAAACTGGAACTCGGCGGCTTTGAATCGCAGTGTGAACCGGTATTGACCGAGTGGATCACGGCTGTCCTCCAGTCACCTCTCAATGAAACCGGCGTAAGCCTGAGTCAACTTT          <  2:26434/145‑1                                                                                                                                                 CCCAGCCGGTTGACCCGAACTGGGTGCGGGAAAAACTGGAACTCGGCGGCTTTGAATCGCAGTGGGAACCGGTATTGACCGAGTGGATCACGGCTGTCCTCCAGGCACCTCTCAATGAAACCGGCGTAAGCCTGAGTCAACTTTCCGCC     >  2:975838/1‑149                                                                                                                                                  CCAGCCGGTTGACCCGAACTGGGTGCGGGAAAAACTGGAACTCGGCGGCTTTGAATCGCAGTGGGAACCGGTATTGACCGAGTGGATCACGGCTGTCCTCCAGGCACCTCTCAATGCACCCGGCGTAAGCCTGAGTCAACTTTCAGCCC    >  1:663641/1‑149                                                                                                                                                  CCAGCCGGTTGACCCGAACTGGGTGCGGGAAAAACTGGAACTCGGCGGCTTTGAATCGCAGTGGGAACCGGTATTGACCGAGTGGATCACGGCTGTCCTCCAGGCACCTCTCAATGAAACCGGCGTAAGCCTGAGTCAACTTTCCGCCC    <  1:153976/149‑1                                                                                                                                                  CCAGCCGGTTGACCCGAACTGGGTGCGGGAAAAACTGGAACTCGGCGGCTTTGAATCGCAGTGGGAACCGGTATTGACCGAGTGGATCACGGCTGTCCTCCAGGCACCTCTCAATGAAACCGGCGTAAGCCTGAGTCAACTTTCCGCCC    >  2:129274/1‑149                                                                                                                                                  CCAGCCGGTTGACCCGAACTGGGTGCGGGAAAAACTGGAACTCGGCGGCTTTGAATCGCAGTGGGAACCGGTATTGACCGAGTGGATCACGGCTGTCCTCCAGGCACCTCTCAATGAAACCGGCGTAAGCCTGAGTCAACTTTCCGCCC    >  2:455006/1‑149                                                                                                                                                  CCAGCCGGTTGACCCGAACTGGGTGCGGGAAAAACTGGAACTCGGCGGCTTTGAATCGCAGTGGGAACCGGTATTGACCGAGTGGATCACGGCTGTCCTCCAGGCACCTCGCAATGAAACCGGCGTATGCCTGAGTCAACTTTCCGCCC    >  1:1138449/1‑149                                                                                                                                                  CCAGCCGGTTGACCCGAACTGGGTGCGGGAAAAACTGGAACTCGGCGGCTTTGAATCGCAGTGGGAACCGGTATTGACCGAGTGGATAACGGCTGTCCTCCAGGCACCTCTCAATGAAACCGGCGTAAGCCTGAGTCATCTTTCCGCCC    >  1:336587/1‑149                                                                                                                                                    AGCCGGTTGACCCGAACTGGGTGCGGGAAAAACTGGAACTCGGCGGCTTTGAATCGCAGTGGGAACCGGTATTGACCGAGTGGATCACGGCTGTCCTCCAGGCACCTCTCAATGAAACCGGCGTAAGCCTGAGTCAACTTTCCGCCCGC  >  1:581410/1‑149                                                                                                                                                                                                                                                                                                          TCTCCACCTGTTTATTGCGGGCGGAAAGTTGACTCAGGCTTACGCCGGTTTCATTGAGAGGTGCCTGGAGGACAGCCGTGATCCACTCGGTCAATACCGGTTCCCACTGCGATTCAAAGCCGCCGAGTTCCAGTTTTTCCCGCACCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2952943‑2953091 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccagCCGGTTGACCCGAACTGGGTGCGGGAAAAACTGGAACTCGGCGGCTTTGAATCGCAGTGGGAACCGGTATTGACCGAGTGGATCACGGCTGTCCTCCAGGCACCTCTCAATGAAACCGGCGTAAGCCTGAGTCAACTTTCCGCCCGC  <  NC_000913/2953105‑2952959

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.