| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3864573 = | 120 (1.750) | 3 (0.050) | 3/260 | NT | 2.6% | coding (675/717 nt) | yidP | UTRA domain‑containing GntR family putative transcriptional regulator |
| ? | NC_000913 | 3864602 = | 108 (1.680) | coding (704/717 nt) | yidP | UTRA domain‑containing GntR family putative transcriptional regulator | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTTCATCCAACCAGCGGTGCGGCGGCGCTCTCTTACGCCACTGTCTATCCGTTGGTAATGTTCCTGCGCATTATCACCCCCCAATTACTGGCGGTGCTCTTCTGGAGTATCGGTTAACTCTTTTCCGGGTGGAGTCGCCGTAAATGGTACTCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3864728‑3864573‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actccaccCGGAAAAGAGTTAACCGATACTCCAGAAGAGCACCGCCAGTAATTGGGGGGTGATAATGCGCAGGAACATTACCAACGGATAGACAGTGGCGTAAGAGAGCGCCGCCGCACCGCTGGTTGGATGAAGATTATTAGCAAACGCCAGCGC > NC_000913/3864602‑3864749 aTTCATCCAACCAGCGGTGAGGCGGCGATCGCTTACGCCACTTTCTATCCGGTGGTAATGTTCCTCCGCATTATCACCCCCCACTTCCTGGCGGTGCTCTTCTGGAGTATCGGTTAACTCTTTTCCGGGGGGAGGCGCCGTAAATGGTA < 2:1070180/148‑1CTTCATCCAACCAGCGGTGCGGCGGCGCTCTCTTACGCCACTGTCTATCCGTTGGTAATGTTCCTGCGCATTATCACACCCCAATTTCTGGCGGTGCTCTTCTGGAGTAACGGTTAACTCTTTTCCGGGTGGATTCGCCTTAAATGGTA > 1:1120060/1‑149 aTCATCCCACCAGCGGTGCGGCGGCGCTCTCTTACGCCACTGTCTATCCGTTGGTAATGTTCCTGCGCATTATCACCCCCCAATTACTGGCGGTGCTCTTCTGGAGTATCGGTTAACTCTTTTCCGGGTGGAGTCGCCGTAAATGGTAC < 2:919622/148‑1 TTCATCCAACCAGCGGTGCGGCGGCGCTCTCTTACGCCACTGTCTATCCGTTGGTAATGTTCCTGCGCATTATCACCCCCCAATTACTGGCGGTGCTCTTCTGGAGTATCGGTTAACTCTTTTCCGGGTGGAGTCGCCGTAAATGGTAC > 1:866373/1‑149 TTCATCCAACCAGCGGTGCGGCGGCGCTCTCTTACGCCACTGTCTATCCGTTGGTAATGTTCCTGCGCATTATCACCCCCCAATTACTGGCGGTGCTCTTCTGGAGTATCGGTTAACTCTTTTCCGGGTGGAGTCGCCGTAAATGGTAC > 1:450928/1‑149 TTCATCCAACCAGCGGTGCGGCGGCGCTCTCTTACGCCACTGTCTATCCGTTGGTAATGTTCCTGCGCATTATCACCACCCAATTACTGGAGGTGCTCTTCTTGAGTATAGGTTAACTCTTTTCCTGTTGGAGTCGCCGTAAATGGTAa > 1:1074818/1‑148 TCATCCAACCAGCGGTGCGGCGGCGCTCTCTTACGCCACTGTCTATCCGTTGGTAATGTTCCTGCGCATTATCACCACCCAATTACTGGCGGTGCTCTTCTGGAGTATCGGTTAACTCTTTTCCGGGTGGAGTCGCCGTAAATGGTACT > 2:73616/1‑149 TCCAACCAGCGGTGCGGCGGCGCTCTCTTACGCCACTGTCTATCCGTTGGTAATGTTCCTGCGCATTATCACCCCCCAATTACTGGCGGTGCTCTTCTGGAGTATCGGTTAACTCTTTTCCGGGTGGAGTCGCCGTAAATGGTACTCCA > 1:461293/1‑149 TCCAACCAGCGGTGCGGCGGCGCTCTCTTACGCCACTGTCTATCCGTTGGTAATGATCCTGCGCATTATCACCCCCCAATTACTCGCGGTGCTCTTATGGAGTATCGGTTAACGCTTTTCCGGGTGGAGTCGCCGTAAATGGTAATCCc > 2:587799/1‑148 CCAACCAGCGGTGCGGCGGCGCTCTCTTACGCCACTGTCTATCCGTTGGTAATGTTCCTGCGCATTATCACCCCCCAATTACTGGCGGTGCTCTTCTGGAGTATCGGTTAACTCTTTTCCGGGTGGAGTCGCCGTAAATGGTACTCCAC < 1:593005/149‑1 CCAACCAGCGGTGCGGCGGCGCTCTCTTACGCCACTGTCTATCCGTTGGTAATGTTCCTGCGCATTATCACCCCCCAATTACTGGCGGTGCTCTTCTGGAGTATCGGTTAACTCTTTTCCGGGTGGAGTCGCCGTAAATGGTACTCCAC > 1:618706/1‑149 ccACCAGCGGTGCGGCGGCGCTCTCTTACGCCCCTGTCTATCCGTTGGTAATGTTCCTGCGCATTATCACCCCCCAATTACTGGCGGTGCTCTTCTGGAGTATCGGTTAACTCTTTTCCGGGTGGAGTCGCCGGAAATGGTACTCCACC > 2:1126186/3‑149 TCTTTTCCGGGTGGAGTCGCCGTAAATGGTACTCCACCCGGAAAAGAGTTAACCGATACTCCAGAAGAGCACCGCCAGTAATTGGGGGGTGATAATGCGCAGGAACATTACCAACGGATAGACAGTGGCGTAAGAG < 1:545569/136‑1 TCTTTTCCGGGTGGAGTCGCCGTAAATGGTACTCCACCCGGAAAAGAGTTAACCGATACTCCAGAAGAGCACCGCCAGTAATTGGGGGGTGATAATGCGCAGGAACATTACCAACGGATAGACAGTGGCGTAAGAG > 2:545569/1‑136 GGGTGGAGTCGCCGTAAATGGTACTCCACCCGGAAAAGAGTTAACCGATACTCCAGAAGAGCACCGCCAGTAATTGGGGGGTGATAATGCGCAGGAACATTACCAACGGATAGACAGTGGCGTAAGAGAGCGCCGCCGCACCGCTGGTT > 1:9049/1‑149 CACCCGGAAAAGAGTTAACCGATACTCCAGAAGAGCACCGCCAGTAATTGGGGGGTGATAATGCGCAGGAACATTACCAACGGATAGACAGTGGCGTAAGAGAGCGCCGCCGCACCGCTGGTTGGATGAAGATTATTAGCAAACGCCAG > 2:357284/1‑149 CACCCGGAAAAGAGTTAACCGATACTCCAGAAGAGCACCGCCAGTAATTGGGGGGTGATAATGCGCAGGAACATTACCAACGGATAGACAGTGGCGTAAGAGAGCGCCGCCGCACCGCTGGTTGGATGAAGATTATTAGCAAACGCCAG > 2:447999/1‑149 ACCCGGAAAAGAGTTAACCGATACTCCAGAAGAGCACCGCCAGTAATTGGGGGGTGATAATGCGCAGGAACATTACCAACGGATAGACAGTGGCGTAAGAGAGCGCCGCCGCACCGCTGGTTGGATGAAGATTATTAGCAAACGCCAGC > 2:24341/1‑149 CCGGAAAAGAGTTAACCGATACTCCAGAAGAGCACCGCCAGTAATTGGGGGGTGATAATGCGCAGGAACATTACCAACGGATAGACAGTGGCGTAAGAGCGCGCCGCCGCACCGCTGGTTGGATGAAGATTATTAGCAAACGCCAGCGC < 1:535602/149‑1 CTTCATCCAACCAGCGGTGCGGCGGCGCTCTCTTACGCCACTGTCTATCCGTTGGTAATGTTCCTGCGCATTATCACCCCCCAATTACTGGCGGTGCTCTTCTGGAGTATCGGTTAACTCTTTTCCGGGTGGAGTCGCCGTAAATGGTACTCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3864728‑3864573‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actccaccCGGAAAAGAGTTAACCGATACTCCAGAAGAGCACCGCCAGTAATTGGGGGGTGATAATGCGCAGGAACATTACCAACGGATAGACAGTGGCGTAAGAGAGCGCCGCCGCACCGCTGGTTGGATGAAGATTATTAGCAAACGCCAGCGC > NC_000913/3864602‑3864749 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |