| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4383649 = | 111 (1.220) | 6 (0.070) | 6/278 | 10.3 | 5.4% | intergenic (+29/‑190) | epmA/yjeM | Elongation Factor P Lys34 lysyltransferase/putative transporter |
| ? | NC_000913 | 4383674 = | 104 (1.220) | intergenic (+54/‑165) | epmA/yjeM | Elongation Factor P Lys34 lysyltransferase/putative transporter | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTGCCCACTGAACTGCACTGCGCAACATTGAGCAGGCAGCGTAAAAACCAATACAGAATTGATACCTGGATGATATCAAATATCCAGTCTTAAATTGTGGCCTTTAACGGAAAAATGAAAACATATGCTACAGAATGGCGCTTATCACGCCATTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4383804‑4383649‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccattctGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACTGGATATTTGATATCATCCAGGTATCAATTCTGTATTGGTTTTTACGCTGCCTGCTCAATGTTGCGCAGTGCAGTTCAGTGGGCACGTGTTATACACGCGC > NC_000913/4383674‑4383819 GTGCCCACTGAACTGCACTGCGCAACATTGAGCAGGCAGCGTAAAAACCAATACAGAATTGATACCTGGATGATATCAAATATCCAGTCTTAAATTGTGGCCTTTAACGGAAAAATGAAAACATATGCTACAGAATGGCGCTTATCACG > 1:681268/1‑149 GCCCACTGAACTGCACTGCGCAACATTGAGCAGGCAGCGTAAAACCCAATACAGAATTGATACATGGATGATATCAAATATCCAGTCTTAAATTGTGTCCTTTAACGGAAAAATGAAAACATATGCTACAGAATGGCGCTTATCACGCC > 2:72120/1‑149 GCCCACTGAACTGCACTGCGCAACATTGAGCAGGCAGCGTAAAAACCAATACAGAATTGATACCTGGATGATATCAAATATCCAGTCTTAAATTGTGGCCTTTAACGGAAAAATGAAAACATATGCTACAGAATGGCGCTTATCACGCC > 1:1405455/1‑149 CACTGAACTGCACTGCGCAACATTGAGCAGGCAGCGTAAAAACCAATACAGAATTGATACCTGGATGATATCAAATATCCAGTCTTAAATTGTGGCCTTTAACGGAAAAATGAAAACATATGCTACAGAATGTCGCTTAACACGCAATT > 1:165592/1‑149 CACTGAACTGCACTGCGCAACATTGAGCAGGCAGCGTAAAAACCAATACAGAATTGATACCTGGATGATATCAAATATCAAGTCTTAAATTGTGGCCTTTAACGGAAAAATGAAAACATATGCTACAGAATGGCGCTTATCACGCCATT > 1:165587/1‑149 ACTGAACTGCACTGCGCAACATTGAGCAGGCAGCGTAAAAACCAATACAGAATTGATACCTGGATGATATCAAATATCCAGTCTTAAATTGTGGCCTTTAACGGAAAAATGAAAACATATGCTACAGAATGGCGCTTATCACGCCATTC < 1:495819/149‑1 ACTGAACTGCACTGCGCAACATTGAGCAGGCAGCGTAAAAACCAATACAGAATTGATACCTGGATGATATCAAATATCCAGTCTTAAATTGTGGCCTTGAACGGAAAAATGAAAACATATGCTACAGAATGGCGCTTATCACGCCATTC > 1:946950/1‑149 TTTAACGGAAAAATGAAAACATATGCTACAGAATGGCGCTTATCACGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACTGGATATTTGATATCATCCAGGTATCAATTCTGTATTGGTTTTTACGCTG > 1:1177910/1‑149 ACGGAAAAATGAAAACATATGCTACAGAATGGCGCTTATCACGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCAGAATTTAAGACTGGATTTTTGATATCATCCTGGTATCAATTCTGTATTGGTTTTTACGCTGCCTG > 2:140985/1‑149 TGAAAACATATGCTACAGAATGGCGCTTATCACGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACTGGATATTTGATATCATCCAGGTATCAATTCTGTATTGGTTTTTACGCTGCCTGCTCAATGTT > 1:1158117/1‑149 CTACAGAATGGCGCTTATCACGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACTGGATATTTGATATCATCCAGGTATCAATTCTGTATTGGTTTTTACGCTGCCTGCTCAATGTTGCGCAGTGCAGT > 1:333350/1‑149 TACAGAATGGCGCTTATCACGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACTGGATATTTGATATCATCCAGGTATCAATTCTGTATTGGTTTTTACGCTGCCTGCTCAATGTTGCGCA < 1:271848/141‑1 TACAGAATGGCGCTTATCACGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACTGGATATTTGATATCATCCAGGTATCAATTCTGTATTGGTTTTTACGCTGCCTGCTCAATGTTGCGCA > 2:271848/1‑141 CGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACTGGATATTTGATATCATCCAGGTATCAATTCTGTATTGGTTTTTACGCTGCCTGCTCAATGTTGCGCAGTGCAGTTCAGTGGGCACGTGTTATAC < 1:1017168/149‑1 GCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACTGGATATTTGATATCATCCAGGTATCAATTCTGTATTGGTTTTTACGCTGCCTGCTCAATGTTGCGCAGTGCAGTTCAGTGGGCACGTGTTATACA > 2:1039552/1‑149 CCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACTGGATATTTGATATCATCCAGGTATCAATTCTGTATTGGTTTTTACGCTGCCTGCTCAATGTTGCGCAGTGCAGTTCAGTGGGCACGTGTTATACAC < 2:193039/149‑1 ATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACTGGATATTTGATATCATCCAGGTATCAATTCTGTATTGGTTTTTACGCTGCCTGCTCAATGTTGCGCAGTGCAGTTCAGTGGGCACGTGTTATACACGC < 1:732893/149‑1 TCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACTGGATATTTGATATCATCCAGGTATCAATTCTGTATTGGTTTTTACGCTGCCTGCTCAATGTTGCGCAGTGCAGTTCAGTGGGCACGTGTTATACACGCGC < 1:624428/149‑1 GTGCCCACTGAACTGCACTGCGCAACATTGAGCAGGCAGCGTAAAAACCAATACAGAATTGATACCTGGATGATATCAAATATCCAGTCTTAAATTGTGGCCTTTAACGGAAAAATGAAAACATATGCTACAGAATGGCGCTTATCACGCCATTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4383804‑4383649‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccattctGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACTGGATATTTGATATCATCCAGGTATCAATTCTGTATTGGTTTTTACGCTGCCTGCTCAATGTTGCGCAGTGCAGTTCAGTGGGCACGTGTTATACACGCGC > NC_000913/4383674‑4383819 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |