| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4373203 | 350 (1.160) | 3 (0.010) | 3/262 | NT | 0.88% | noncoding (7/99 nt) | RIP328 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP328 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 4373214 | 347 (1.210) | noncoding (18/99 nt) | RIP328 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP328 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGCAATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4373048‑4373203‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatAAGCGAAGCGCATCAGGCAATTATACGTTTGTCACCCAGCCTCTGGATCACATCAGTTCGGGCACTTATAAACCTGACCGATAATCTGGCTATCCGTCGGGACAAAACTGGACAACATTCCCTGCGACGGGCTACTGATGCCATAAAT < NC_000913/4373214‑4373067 TGCAATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGATGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTG > 2:3376959/1‑150TGCAATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTG > 2:757658/1‑150TGCAATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTG > 1:843623/1‑150TGCAATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTG > 1:1314896/1‑150TGCAATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTG > 1:4015655/1‑150TGCAATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTG > 1:3610866/1‑150TGCAATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTG > 1:2174485/1‑150TGCAATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTG > 1:1569484/1‑150 GCAATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGC < 2:1566379/150‑1 CAATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCC > 2:4220076/1‑150 CAATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCC < 1:1797339/150‑1 CAATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCC > 2:4226355/1‑150 AATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCT < 2:2553072/150‑1 AATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCT > 2:1392134/1‑150 TGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGA < 2:1666632/150‑1 GGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGAT > 2:1463623/1‑150 CATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTAGAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATAAGCGAAGCGCATCAGGCAAT < 2:3714421/150‑1 CCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATAAGCGAAGCGCATCAGGCAATTATACGTTT < 1:2909656/150‑1 CGTCGCAGGGATTGTTGTCCAGTTTTGTCCCGACGGATAGCCAGTTTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATAAGCGAAGCGCATCAGGCAATTATACGTTTGT < 1:4256519/150‑1 GCCTGATAAGCGAAGCGCATCAGGCAATTATACGTTTGTCACCCAGCCTCTGGATCACATCAGTTCGGGCACTTATAAACCTGACCGATAATCTGGCTATCCGTCGGGACAAAACTGGACAACATTCCCTGCGACGGGCTACTGATGCCA > 1:8022/1‑150 GCCTGATAAGCGAAGCGCATCAGGCAATTATACGTTTGTCACCCAGCCTCTGGATCACATCAGTTCGGGCACTTATAAACCTGACCGATAATCTGGCTATCCGTCGGGACAAAACTGGACAACATTCCCTGCGACGGGCTACTGATGCCA > 1:2584155/1‑150 GCCTGATAAGCGAAGCGCATCAGGCAATTATACGTTTGTCACCCAGCCTCTGGATCACATCAGTTCGGGCACTTATAAACCTGACCGATAATCTGGCTATCCGTCGGGACAAAACTGGACAACATTCCCTGCGACGGGCTACTGATGCCA > 2:2518945/1‑150 GCCTGATAAGCGAAGCGCATCAGGCAATTATACGTTTGTCACCCAGCCTCTGGATCACATCAGTTCGGGCACTTATAAACCTGACCGATAATCTGGCTATCCGTCGGGACAAAACTGGACAACATTCCCTGCGACGGGCTACTGATGCCA > 1:2584145/1‑150 CCTGATAAGCGAAGCGCATCAGGCAATTATACGTTTGTCACCCAGCCTCTGGATCACATCAGTTCGGGCACTTATAAACCTGACCGATAATCTGGCTATCCGTCGGGACAAAACTGGACAACATTCCCTGCGACGGGCTACTGATGCCAT > 1:660791/1‑150 CCTGATAAGCGAAGCGCATCAGGCAATTATACGTTTGTCACCCAGCCTCTGGATCACATCAGTTCGGGCACTTATAAACCTGACCGATAATCTGGCTATCCGTCGGGACAAAACTGGACAACATTCCCTGCGACGGGCTACTGATGCCAT > 1:1891680/1‑150 GATAAGCGAAGCGCATCAGGCAATTATACGTTTGTCACCCAGCCTCTGGATCACATCAGTTCGGGCACTTATAAACCTGACCGATAATCTGGCTATCCGTCGGGACAAAACTGGACAACATTCCCTGCGACGGGCTACTGATGCCATAAA > 1:581932/1‑150 GATAAGCGAAGCGCATCAGGCAATTATACGTTTGTCACCCAGCCTCTGGATCACATCAGTTCGGGCACTTATAAACCTGACCGATAATCTGGCTATCCGTCGGGACAAAACTGGACAACATTCCCTGCGACGGGCTACTGATGCCATAAA < 1:1343534/150‑1 ATAAGCGAAGCGCATCAGGCAATTATACGTTTGTCACCCAGCCTCTGGATCACATCAGTTCGGGCACTTATAAACCTGACCGATAATCTGGCTATCCGTCGGGACAAAACTGGACAACATTCCCTGCGACGGGCTACTGATGCCATAAAT < 1:2638225/150‑1 ATAAGCGAAGCGCATCAGGCAATTATACGTTTGTCACCCAGCCTCTGGATCACATCAGTTCGGGCACTTATAAACCTGACCGATAATCTGGCTATCCGTCGGGACAAAACTGGACAACATTCCCTGCGACGGGCTACTGATGCCATAAAT > 1:1493803/1‑150 TGCAATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4373048‑4373203‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatAAGCGAAGCGCATCAGGCAATTATACGTTTGTCACCCAGCCTCTGGATCACATCAGTTCGGGCACTTATAAACCTGACCGATAATCTGGCTATCCGTCGGGACAAAACTGGACAACATTCCCTGCGACGGGCTACTGATGCCATAAAT < NC_000913/4373214‑4373067 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |