New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4306827 =	72 (1.210)	3 (0.060)	3/254	NT	4.6%	intergenic (‑230/+43)	yjcS/alsK	metallo‑beta‑lactamase superfamily protein/D‑allose kinase
	?	NC_000913	4306864 =	57 (1.050)					intergenic (‑267/+6)	yjcS/alsK	metallo‑beta‑lactamase superfamily protein/D‑allose kinase
Rejected: Frequency below/above cutoff threshold.

CGCATCAGGTCGTGCGCTTTATTGCCGCCTCATCTTCTGACTTTAATGGCGCTCAGGGTGCAGCAATATTGGCGCATCAACGTTTTTTGCCACAGTTCTGTGCTAAAGCCCCATGAGTAAAACGTTGGCACAGTAGCGCAATGTCCCGCTGTGCCAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4306985‑4306827 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtgccaacgTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGAGGCGGCAATAAAGCGCACGACCTGATGCGGCAGTGGACGGCGCAGGTACTTTTGG  >  NC_000913/4306864‑4307011                                                                                                                                                                                                                                                                                                                     CGCATCAGGTCGTGCGCTTTATTGCCGCCTCATCTTCTGACTTTAATGGCGCTCAGGGTGCAGCAATATTGGCGCATCAACGTTTTTTGCCACAGTTCTGTGCTAAAGCCCCATGAGTAAAACGTTGGCACAGTAGCGCAATGTCCCGC                                                                                                                                                                >  1:429298/1‑149   CATCAGGTCGTGAGCTTTATTGCCGCCTCATCTTCTGACTTTAATGGCGCACAGGGTGCAGCAATATTGGCGCATCAACGTTTTTTGCCACAGTTCTGTGCTAAATCCCCATGAGAAAAACGATGACACAGTAGCGCAATGTCCAGCTG                                                                                                                                                              >  2:966049/1‑149    ATCAGGTCGTGCGCTTTATTGCCGCCTCATCTTCTGACTTTAATGGCGCTCAGGGTGCAGCAATATTGGCGCATCAACGTTTTTTGCCACAGTTCTGTGCTAAAGCCCCATGAGTAAAACGTTGGCACAGTAGCGCAATGTCCCGCTGT                                                                                                                                                             <  1:138588/149‑1                                                                                                                            GTTGGCACAGTAGCGCAATGTCCCGCTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGATGATGAGGCGGCAATAAAGCGCACGA                                     >  1:127736/1‑149                                                                                                                                GCACAGTAGCGCAATGTCCCGCTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGC                                                                              <  1:608311/104‑1                                                                                                                                GCACAGTAGCGCAATGTCCCGCTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGC                                                                              >  2:608311/1‑104                                                                                                                                                          CCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGAGGCGGCAATAAAGCGCACGACCTGATGCGGCAGTGGACGGCGCAGGTACT       >  2:664805/1‑149                                                                                                                                                           CAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGAGGCGGCAATAAAGCGCACGACCTGATGCGGCAGTGGACGGCGCAGGTACTT      >  1:279574/1‑149                                                                                                                                                           CAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGAGGCGGCAATAAAGCGCACGACCTGATGCGGCAGTGGACGGCGCAGGTACTT      >  1:340556/1‑149                                                                                                                                                             ACGTTTTACTAATGGGGCTTTAGCACAGAACTGTGGCAAAAAAGGTTGATGCTCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGAGGCGGCAATAAAGCGCACGACCTGATGCGGCAGTGGACGTCGCAGGTACTTTT    <  2:620266/149‑1                                                                                                                                                               GTTTTACTCATGGGGCTTTAGCACAGAACTTTGGCAAAAAACGTTGATTCTCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGAGGCGGCAATAAAGCGCACGACCTGATGCGGCAGTGGACGGCGCAGGTACTTTTGG  <  2:616189/149‑1                                                                                                                                                               GTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGAGGCGCCAATAAAGCGCACGACCTGATGCGGCAGTGGACGGCGCAGGTACTTTTGG  <  2:1491/149‑1                                                                                                                                                               GTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCGGCACCCTGAGCGCCATTAAAGTCAGAAGATGAGGCGGCAATAAAGCGCACGACCTGATGCGGCAGTGGACGGCGCAGGTACTTTTGG  <  1:294856/149‑1                                                                                                                                                               GTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATAGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGCGGCGGCAATAAAGCGCACGACCTGATGCGGCAGTGGACGGCGCAGGTACTTTTGG  <  2:145605/149‑1                                                                                                                                                               GTTTTACACCTGTGGCCTTCGCACAGAACTGTGGCAAAAAACGTTGAAGCGCCAATATTGCTGCACCCTGAGCGCCATTAACGTCAGAACATGAGGCGGCAATAAAGCGCACGACCTGATGCGGCAGAGGACGGCGCAGGTACTTTTGG  <  1:911096/149‑1                                                                                                                                                                                                                                                                                                                     CGCATCAGGTCGTGCGCTTTATTGCCGCCTCATCTTCTGACTTTAATGGCGCTCAGGGTGCAGCAATATTGGCGCATCAACGTTTTTTGCCACAGTTCTGTGCTAAAGCCCCATGAGTAAAACGTTGGCACAGTAGCGCAATGTCCCGCTGTGCCAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4306985‑4306827 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtgccaacgTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGAGGCGGCAATAAAGCGCACGACCTGATGCGGCAGTGGACGGCGCAGGTACTTTTGG  >  NC_000913/4306864‑4307011

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.