mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_bme_pgi | 4,296,061 | 0 | C | T | 29.8% | 420.0 / 220.5 | 301 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913_3_bme_pgi | 3,214,660 | 0 | A | G | 20.8% | 371.0 / 22.7 | 173 | E538E (GAA→GAG) | rpoD | RNA polymerase, sigma 70 (sigma D) factor |
| * | NC_000913_3_bme_pgi | 3,781,152 | 0 | A | G | 20.6% | 338.1 / 25.2 | 166 | intergenic (+135/‑63) | lldD/trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| * | NC_000913_3_bme_pgi | 1,864,758 | 0 | G | A | 20.2% | 424.6 / 87.5 | 188 | intergenic (+24/+24) | yeaD/yeaE | D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
| Marginal new junction evidence (lowest skew 10 of 595 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | = 2113347 | 193 (1.010) | 35 (0.200) | 18/180 | 15.6 | 16.7% | intergenic (‑286/+87) | rfbB/wcaN | dTDP‑glucose 4,6 dehydratase, NAD(P)‑binding/putative regulatory subunit for GalU |
| ? | NC_000913_3_bme_pgi | = 2113385 | 171 (0.970) | intergenic (‑324/+49) | rfbB/wcaN | dTDP‑glucose 4,6 dehydratase, NAD(P)‑binding/putative regulatory subunit for GalU | |||||
| * | ? | NC_000913_3_bme_pgi | = 4171607 | 41 (0.210) | 52 (0.290) | 16/184 | 17.0 | 57.5% | intergenic (+63/‑30) | rrlB/rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon |
| ? | NC_000913_3_bme_pgi | = 4213022 | NA (NA) | intergenic (+76/‑18) | rrlE/rrfE | 23S ribosomal RNA of rrnE operon/5S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913_3_bme_pgi | = 3411602 | 166 (0.870) | 20 (0.120) | 14/174 | 17.3 | 11.8% | intergenic (+35/‑51) | fis/yhdJ | global DNA‑binding transcriptional dual regulator/DNA adenine methyltransferase, SAM‑dependent |
| ? | NC_000913_3_bme_pgi | = 3411616 | 152 (0.900) | intergenic (+49/‑37) | fis/yhdJ | global DNA‑binding transcriptional dual regulator/DNA adenine methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913_3_bme_pgi | = 225998 | NA (NA) | 36 (0.200) | 16/188 | 17.4 | NA | noncoding (240/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_bme_pgi | = 226015 | NA (NA) | noncoding (257/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_bme_pgi | = 3946670 | 210 (1.100) | 32 (0.180) | 15/184 | 17.6 | 14.0% | intergenic (+63/‑30) | rrlC/rrfC | 23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_bme_pgi | = 4040499 | NA (NA) | intergenic (+76/‑18) | rrlA/rrfA | 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913_3_bme_pgi | 2196343 = | 173 (0.900) | 22 (0.130) | 14/178 | 17.6 | 12.0% | intergenic (+10/‑131) | metG/yehH | methionyl‑tRNA synthetase/DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function |
| ? | NC_000913_3_bme_pgi | 2196367 = | 165 (0.950) | intergenic (+34/‑107) | metG/yehH | methionyl‑tRNA synthetase/DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function | |||||
| * | ? | NC_000913_3_bme_pgi | = 228108 | NA (NA) | 66 (0.360) | 15/188 | 18.0 | NA | noncoding (2350/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_bme_pgi | = 228124 | NA (NA) | noncoding (2366/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_bme_pgi | 225078 = | NA (NA) | 62 (0.350) | 14/182 | 18.0 | NA | noncoding (1308/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_bme_pgi | 225100 = | NA (NA) | noncoding (1330/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_bme_pgi | = 3946688 | 188 (0.980) | 50 (0.280) | 14/184 | 18.2 | 22.1% | intergenic (+81/‑12) | rrlC/rrfC | 23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_bme_pgi | = 4171601 | NA (NA) | intergenic (+57/‑36) | rrlB/rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon | |||||
| * | ? | NC_000913_3_bme_pgi | 2726200 = | NA (NA) | 50 (0.280) | 14/184 | 18.2 | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_bme_pgi | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||