New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 1286639	NA (NA)	6 (0.390)	6/242	1.1	NA	noncoding (46/72 nt)	REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913_3_pae_pgi	= 1286665	NA (NA)					noncoding (72/72 nt)	REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences

TTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGgcccg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_pgi/1286564‑1286639 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCGATGGCACCACGTTTACCGGGCCTACAATATCCTCCCCTGTAGGTC  <  NC_000913_3_pae_pgi/1286665‑1286616                                                                                                                                TTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGATGGCACCACGTTTACCGGGC                          >  1:189218/1‑102 TTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGATGGCACCACGTTTACCGGGC                          <  2:189218/102‑1                               GTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGATGGCACCACGTTTACCGGGCC                         >  1:68235/1‑73                               GTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGATGGCACCACGTTTACCGGGCC                         <  2:68235/73‑1                                              CTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGATGGCACCACGTTTACCGG                            <  1:182465/55‑1                                              CTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGATGGCACCACGTTTACCGG                            >  2:182465/1‑55                                                                              CCCGATGGCACCACGTTTACCGGGCCTACAATATCCTCCCCTGTAGGTC  >  1:199730/1‑49                                                                              CCCGATGGCACCACGTTTACCGGGCCTACAATATCCTCCCCTGTAGGTC  <  2:199730/49‑1                                                                                                                                TTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGgcccg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_pgi/1286564‑1286639 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCGATGGCACCACGTTTACCGGGCCTACAATATCCTCCCCTGTAGGTC  <  NC_000913_3_pae_pgi/1286665‑1286616

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.