| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | 1911650 = | 109 (0.710) | 23 (0.170) | 22/240 | 12.0 | 19.1% | intergenic (+1/+45) | yebQ/htpX | putative transporter/putative endopeptidase |
| ? | NC_000913_3_pae_pgi | 1911680 = | 96 (0.690) | intergenic (+31/+15) | yebQ/htpX | putative transporter/putative endopeptidase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCATGATGGCTCTCTGCATTAACGGTAAGTCGAAATCGCTCAGTGAGTTGTTCATGACCCACCCGCCGCTGGATAAACGAATTGAAGCTCTGCGTACGGGTGAATACCTGAAGTAATATGAAGTAAATACTAAAAAGCGCGTCCTGATCGACGCGCTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_pgi/1911810‑1911650‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacgcgctttttAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAATGCAGAGAGCCATCATGCTGGTTGCTTCTTGCGGTT > NC_000913_3_pae_pgi/1911680‑1911828 GCATGATGGCTCTCTGCATTAACGGTAAGTCGAAATCGCTCAGTGAGTTGTTCATGACCCACCCGCCGCTGGATAAACGAATTGAAGCTCTGCGTACGGGTGAATACCTGAAGTAATATGAAGTAAATACTAAAAAGCGCGTCCTGATCG < 1:1488619/150‑1 ATGATGGCTCTCTGCATTAACGGTAAGTCGAAATCGCTCAGTGAGTTGTTCATGACCCACCCGCCGCTGGATAAACGAATTGAAGCTCTGCGTACGGGTGAATACCTGAAGTAATATGAAGTAAATACTAAAAAGCGCGTCCTGATCGAC < 4:1022086/150‑1 ATGGCTCTCTGCATTAACGGTAAGTCGAAATCGCTCAGTGAGTTGTTCATGACCCACCCGCCGCTGGATAAACGAATTGAAGCTCTGCGTACGGGTGAATACCTGAAGTAATATGAAGTAAATACTAAAAAGCGCGTCCTGATCGACGCG > 2:100697/1‑150 ATGGCTCTCTGCATTAACGGTAAGTCGAAATCGCTCAGTGAGTTGTTCATGACCCACCCGCCGCTGGATAAACGAATTGAAGCTCTGCGTACGGGTGAATACCTGAAGTAATATGAAGTAAATACTAAAAAGCGCGTCCTGATCGACGCG > 4:615325/1‑150 GCTCTCTGCATTAACGGTAAGTCGAAATCGCTCAGTGAGTTGTTCATGACCCACCCGCCGCTGGATAAACGAATTGAAGCTCTGCGTACGGGTGAATACCTGAAGTAATATGAAGTAAATGCTAAAAAGCGCGTCCTGATCGACGCGCTT > 2:801924/1‑150 TCTCTGCATTAACGGTAAGTCGAAATCGCTCAGTGAGTTGTTCATGACCCACCCGCCGCTGGATAAACGAATTGAAGCTCTGCGTACGGGTGAATACCTGAAGTAATATGAAGTAAATACTAAAAAGCGCGTCCTGATCGACGCGCTTTT < 1:1074519/150‑1 TCTCTGCATTAACGGTAAGTCGAAATCGCTCAGTGAGTTGTTCATGACCCACCCGCCGCTGGATAAACGAATTGAAGCTCTGCGTACGGGTGAATACCTGAAGTAATATGAAGTAAATACTAAAAAGCGCGTCCTGATCGACGCGCTTTT < 4:637473/150‑1 CTCTGCATTAACGGTAAGTCGAAATCGCTCAGTGAGTTGTTCATGACCCACCCGCCGCTGGATAAACGAATTGAAGCTCTGCGTACGGGTGAATACCTGAAGTAATATGAAGTAAATACTAAAAAGCGCGTCCTGATCGACGCGCTTTTT > 3:919789/1‑150 CTCTGCATTAACGGTAAGTCGAAATCGCTCAGTGAGTTGTTCATGACCCACCCGCCGCTGGATAAACGAATTGAAGCTCTGCGTACGGGTGAATACCTGAAGTAATATGAAGTAAATACTAAAAAGCGCGTCCTGATCGACGCGCTTTTT < 3:549485/150‑1 CTGCATTAACGGTAAGTCGAAATCGCTCAGTGAGTTGTTCATGACCCACCCGCCGCTGGATAAACGAATTGAAGCTCTGCGTACGGGTGAATACCTGAAGTAATATGAAGTAAATACTAAAAAGCGCGTCCTGATCGACGCGCTTTTTAG < 2:424751/150‑1 CTGGATAAACGAATTGAAGCTCTGCGTACGGGTGAATACCTGAAGTAATATGAAGTAAATACTAAAAAGCGCGTCCTGATCGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTT > 4:732363/1‑150 GAAGCTCTGCGTACGGGTGAATACCTGAAGTAATATGAAGTAAATACTAAAAAGCGCGTCCTGATCGACGCGCTTTTTAGTATTTACTTCACATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTG > 2:978816/1‑150 GCTCTGCGTACGGGTGAATACCTGAAGTAATATGAAGTAAATACTAAAAAGCGCGTCCTGATCGACGCGCTTTTTAGTATTTACTT > 3:732948/1‑86 GCTCTGCGTACGGGTGAATACCTGAAGTAATATGAAGTAAATACTAAAAAGCGCGTCCTGATCGACGCGCTTTTTAGTATTTACTT < 4:732948/86‑1 CTCTGCGTACGGGTGAATACCTGAAGTAATATGAAGTAAATACTAAAAAGCGCGTCCTGATCGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTC > 1:1081791/1‑150 GTGAATACCTGAAGTAATATGAAGTAAATACTAAAAAGCTCGTCCTGATCGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCA > 1:818487/1‑150 AAGTAAATACTAAAAAGCGCGTCCTGATCGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAA > 2:64082/1‑122 AAGTAAATACTAAAAAGCGCGTCCTGATCGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAA < 1:64082/122‑1 AAATACTAAAAAGCGCGTCCTGATCGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTT < 4:21787/148‑1 AAATACTAAAAAGCGCGTCCTGATCGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTT > 3:21787/1‑148 TAAAAAGCGCGTCCTGATCGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAATGCAGA > 1:1574623/1‑150 TAAAAAGCGCGTCCTGATCGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTT < 4:247806/130‑1 TAAAAAGCGCGTCCTGATCGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTT > 3:247806/1‑130 AAAAGCGCGTCCTGATCGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGTGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAATGCAGAGA < 3:732363/150‑1 AAAAGCGCGTCCTGATCGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATC < 2:1314378/89‑1 AAAAGCGCGTCCTGATCGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATC > 1:1314378/1‑89 AAAGCGCGTCCTGATCGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAATGCAGAGAG > 1:224717/1‑150 AAGCGCGTCCTGATCGACGCGCTTTTTAGTATTTACTTCATATGACTTCAGGTCTTCACCCGTACGCATAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAATGCAGAGAGC > 4:1087066/1‑150 AGCGCGTCCTGATCGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAATGCAGAGAG > 4:464267/1‑148 AGCGCGTCCTGATCGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAATGCAGAGAG < 3:464267/148‑1 CCTGATCGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAATGCAGAGAGCCATCATGC < 2:1574623/150‑1 GATCGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAATGCAGAGAGCCATCATGCTGG > 1:1635181/1‑150 GACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAATGCAGAGAGCCATCATGCTGGTTGC > 4:785249/1‑150 CGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAATGCAGAGAGCCATCATGCTGGTTGCTT < 4:732851/150‑1 CGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAATGCAGAGAGCCATCATGCTGGTTGCTT < 1:606767/150‑1 GCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAATGCAGAGAGCCATCATGCTGGTTGCTTCTT < 2:1489814/150‑1 GCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGT < 1:1516232/82‑1 GCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGT > 2:1516232/1‑82 TTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAATGCAGAGAGCCATCATGCTGGTTGCTTCTTGC > 3:519224/1‑150 TTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAATGCAGAGAGCCATCATGCTGGTTGCTTCTTGCG < 1:297907/150‑1 TTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAATGCAGAGAGCCATCATGCTGGTTGCTTCTTGCG < 4:487990/150‑1 TTTTAGTATTTACTTAATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAATGCAGAGAGCCATCATGCTGGTTGCTTCTTGCG < 1:1405884/150‑1 TTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGGACAACTCACTGAGCGATTTCGACTTACCGTTAATGCAGAGAGCCATCATGCTGGTTGCTTCTTG > 2:1699335/1‑147 TTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGGACAACTCACTGAGCGATTTCGACTTACCGTTAATGCAGAGAGCCATCATGCTGGTTGCTTCTTG < 1:1699335/147‑1 TTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAATGCAGAGAGCCATCATGCTGGTTGCTTCTTGCGG < 2:1531333/150‑1 TTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAATGCAGAGAGCCATCATGCTGGTTGCTTCTTGCGG < 1:1657188/150‑1 TTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAATGCAGAGAGCCATCATGCTGGTTGCTTCTTGCGG > 4:767100/1‑150 TTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAATGCAGAGAGCCATCATGCTGGTTGCTTCTTGCGG < 2:1098250/150‑1 TTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAATGCAGAGAGCCATCATGCTGGTTGCTTCTTGCGGT < 2:818487/150‑1 TAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAATGCAGAGAGCCATCATGCTGGTTGCTTCTTGCGGTT < 1:1100847/150‑1 GCATGATGGCTCTCTGCATTAACGGTAAGTCGAAATCGCTCAGTGAGTTGTTCATGACCCACCCGCCGCTGGATAAACGAATTGAAGCTCTGCGTACGGGTGAATACCTGAAGTAATATGAAGTAAATACTAAAAAGCGCGTCCTGATCGACGCGCTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_pgi/1911810‑1911650‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacgcgctttttAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAATGCAGAGAGCCATCATGCTGGTTGCTTCTTGCGGTT > NC_000913_3_pae_pgi/1911680‑1911828 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |