mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,170,734 | 0 | G | T | 31.0% | 97.8 / 23.8 | 100 | intergenic (‑51/+257) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 2,463,951 | 0 | G | T | 30.6% | 49.2 / 11.3 | 37 | intergenic (+10/‑343) | gtrS/tfaS | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage/pseudogene, CPS‑53 (KpLE1) prophage; tail fiber assembly protein fragment;Phage or Prophage Related |
| * | CP009273 | 161,056 | 0 | C | G | 29.7% | 62.2 / 10.5 | 37 | intergenic (+35/‑161) | hrpB/mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| * | CP009273 | 838,652 | 0 | T | G | 27.0% | 160.6 / 26.9 | 89 | F289V (TTT→GTT) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| * | CP009273 | 4,402,598 | 0 | C | G | 26.0% | 190.7 / 10.7 | 75 | S132C (TCT→TGT) | yjfM | DUF1190 family protein |
| * | CP009273 | 838,658 | 0 | G | T | 20.2% | 190.5 / 14.2 | 89 | A291S (GCC→TCC) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3668609 | 141 (1.240) | 5 (0.040) | 3/262 | 8.5 | 3.5% | coding (464/1323 nt) | yhjE | MFS superfamily sugar transport 1 family protein |
| ? | CP009273 | 3668613 = | 133 (1.190) | coding (468/1323 nt) | yhjE | MFS superfamily sugar transport 1 family protein | |||||
| * | ? | CP009273 | = 3486152 | 145 (1.280) | 3 (0.030) | 3/262 | 8.5 | 2.4% | coding (226/1182 nt) | tsgA | putative transporter |
| ? | CP009273 | = 3486262 | 97 (0.870) | coding (336/1182 nt) | tsgA | putative transporter | |||||
| * | ? | CP009273 | = 2904910 | 181 (1.600) | 3 (0.030) | 3/264 | 8.5 | 1.8% | coding (2101/2235 nt) | relA | (p)ppGpp synthetase I/GTP pyrophosphokinase |
| ? | CP009273 | = 3385997 | 154 (1.370) | coding (3621/3801 nt) | yhdP | DUF3971‑AsmA2 domains protein | |||||
| * | ? | CP009273 | = 2776871 | 63 (0.560) | 3 (0.030) | 3/260 | 8.5 | 3.8% | intergenic (‑208/+126) | pinH/ypjC | pseudogene, invertase resolvase family/pseudogene |
| ? | CP009273 | 3065553 = | 91 (0.820) | coding (429/1164 nt) | pgk | phosphoglycerate kinase | |||||
| * | ? | CP009273 | 2245939 = | 138 (1.220) | 3 (0.030) | 3/260 | 8.5 | 2.1% | coding (761/1089 nt) | yeiI | putative kinase |
| ? | CP009273 | 3022593 = | 145 (1.310) | coding (1698/1920 nt) | ygfT | putative oxidoreductase, Fe‑S subunit/nucleotide‑binding subunit | |||||
| * | ? | CP009273 | 1215364 = | 39 (0.340) | 3 (0.030) | 3/264 | 8.5 | 3.4% | pseudogene (308/2648 nt) | ycgH | pseudogene; putative ATP‑binding component of a transport system |
| ? | CP009273 | 2404138 = | 130 (1.150) | coding (694/1833 nt) | yfbS | putative transporter | |||||
| * | ? | CP009273 | 502731 = | 133 (1.170) | 3 (0.030) | 3/266 | 8.6 | 2.3% | noncoding (72/84 nt) | chiX | sRNA antisense regulator of OM chitoporin ChiP(YbfM), Hfq‑dependent |
| ? | CP009273 | 1546635 = | 121 (1.070) | intergenic (+387/+20) | fdnI/yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator | |||||