mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 699,722 | 0 | A | G | 64.8% | 40.7 / 46.0 | 54 | intergenic (+115/‑129) | PP_t06/PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| * | NC_002947 | 1,327,121 | 0 | C | T | 51.0% | 36.8 / 141.6 | 100 | intergenic (+97/‑196) | PP_16SE/PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| * | NC_002947 | 4,348,705 | 0 | A | G | 48.2% | 38.1 / 156.2 | 113 | intergenic (‑70/+404) | PP_3820/galU | group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| * | NC_002947 | 195,634 | 0 | C | T | 44.0% | 40.7 / 101.5 | 92 | T380T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 197,590 | 0 | T | C | 33.8% | 96.0 / 67.5 | 77 | D1032D (GAT→GAC) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 197,572 | 0 | G | A | 30.7% | 134.2 / 66.4 | 89 | K1026K (AAG→AAA) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 195,559 | 0 | C | A | 27.1% | 106.5 / 38.1 | 62 | T355T (ACC→ACA) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 196,351 | 0 | C | G | 23.2% | 154.9 / 51.2 | 82 | T619T (ACC→ACG) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 196,306 | 0 | T | C | 22.3% | 168.1 / 49.4 | 94 | N604N (AAT→AAC) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 196,327 | 0 | A | C | 21.7% | 181.7 / 48.1 | 92 | T611T (ACA→ACC) | PP_0168 | putative surface adhesion protein |
| Marginal new junction evidence (lowest skew 10 of 56 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4808174 = | 5 (0.090) | 17 (0.390) | 13/212 | 3.2 | 43.2% | intergenic (‑283/‑272) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | NC_002947 | = 5988935 | 41 (0.930) | intergenic (+229/‑317) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | NC_002947 | = 2957080 | 65 (1.110) | 10 (0.180) | 9/272 | 5.7 | 13.8% | intergenic (+35/‑161) | PP_2588/PP_2589 | class III aminotransferase/aldehyde dehydrogenase family protein |
| ? | NC_002947 | 2957165 = | 62 (1.090) | intergenic (+120/‑76) | PP_2588/PP_2589 | class III aminotransferase/aldehyde dehydrogenase family protein | |||||
| * | ? | NC_002947 | 611504 = | NA (NA) | 7 (0.130) | 7/268 | 6.5 | NA | coding (401/966 nt) | PP_0526 | transposase |
| ? | NC_002947 | 611533 = | NA (NA) | coding (430/966 nt) | PP_0526 | transposase | |||||
| * | ? | NC_002947 | 2664008 = | 45 (0.770) | 5 (0.100) | 5/234 | 6.7 | 13.7% | intergenic (+33/‑130) | prpC/acnA‑II | methylcitrate synthase/aconitate hydratase |
| ? | NC_002947 | 2664089 = | 26 (0.530) | intergenic (+114/‑49) | prpC/acnA‑II | methylcitrate synthase/aconitate hydratase | |||||
| * | ? | NC_002947 | 4512713 = | 57 (0.970) | 5 (0.090) | 5/258 | 7.2 | 8.8% | coding (2279/2505 nt) | ftsK | DNA translocase FtsK |
| ? | NC_002947 | = 4512709 | 52 (0.970) | coding (2283/2505 nt) | ftsK | DNA translocase FtsK | |||||
| * | ? | NC_002947 | = 1332427 | 87 (1.480) | 3 (0.070) +37 bp |
3/208 | 7.2 | 6.0% | intergenic (+8/‑1248) | PP_1157/PP_1159 | acetolactate synthase/membrane protein |
| ? | NC_002947 | 3807954 = | 41 (0.700) | intergenic (+26/+101) | PP_3364/PP_3365 | two‑component system response regulator/acetolactate synthase | |||||
| * | ? | NC_002947 | = 5816860 | 44 (0.750) | 5 (0.090) | 5/268 | 7.4 | 13.4% | intergenic (+46/+83) | PP_5092/pilT | NLP/P60 protein/twitching motility protein |
| ? | NC_002947 | 5816924 = | 23 (0.410) | intergenic (+110/+19) | PP_5092/pilT | NLP/P60 protein/twitching motility protein | |||||
| * | ? | NC_002947 | 4955809 = | 47 (0.800) | 5 (0.090) | 5/266 | 7.4 | 9.6% | coding (946/1374 nt) | fliI | flagellum‑specific ATP synthase |
| ? | NC_002947 | 4955856 = | 50 (0.900) | coding (899/1374 nt) | fliI | flagellum‑specific ATP synthase | |||||
| * | ? | NC_002947 | 4537753 = | NA (NA) | 7 (0.130) | 5/268 | 7.4 | 10.3% | coding (1088/1533 nt) | PP_4025 | transposase |
| ? | NC_002947 | = 4626474 | 64 (1.090) | coding (1030/1533 nt) | PP_4091 | transposase | |||||
| * | ? | NC_002947 | = 2987610 | NA (NA) | 6 (0.110) | 5/268 | 7.4 | NA | coding (789/2991 nt) | PP_2612 | membrane protein |
| ? | NC_002947 | = 2987639 | NA (NA) | coding (760/2991 nt) | PP_2612 | membrane protein | |||||