| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 1525192 = | 117 (0.910) | 6 (0.050) | 6/232 | NT | 5.6% | intergenic (‑265/+57) | asnS/dnaQ | asparagine‑‑tRNA ligase/DNA‑directed DNA polymerase III epsilon subunit |
| ? | CP000730 | 1525239 = | 95 (0.810) | intergenic (‑312/+10) | asnS/dnaQ | asparagine‑‑tRNA ligase/DNA‑directed DNA polymerase III epsilon subunit | |||||
TTTTGAACAAACACTTGAAAATTATCGTCAGAAAAAAGGCGACATTCAACAGTTTGGAAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGAATTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1525342‑1525192‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaagaattttACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCAAAAAAGTTTTTATAATTACTGTTTATGAGTCGATCATC > CP000730/1525239‑1525377 TTTTGAACAAACACTTGAAAATTATCGTCAGAAAAAAGGCGACATTCAACAGTTTGGAAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTA > 2:94878/1‑141 TTTGAACAAACACTTGAAAATTATCGTCAGAAAAAAGGCGACATTCAACAGTTTGGAAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTAC < 1:977115/141‑1 TTGAACAAACACTTGAAAATTATCGTCAGAAAAAAGGCGACATTCAACAGTTTGGAAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACA > 2:1432914/1‑141 TTGAACAAACACTTGAAAATTATCGTCAGAAAAAAGGCGACATTCAACAGTTTGGAAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACA < 1:1496029/141‑1 GAACAAACACTTGAAAATTATCGTCAGAAAAAAGTCGACATTCAACAGTTTGGAAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAG > 2:290916/1‑141 AACAAACAGTTGAAAATTAAAAAAAAAAAAAAGGCGACATTCAACAGTTTGGAAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGA < 2:1028433/141‑1 AACAAACACTTGAAAATTATCGTCAGAAAAAAGGCGACATTCAACAGTTTGGAAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGA < 1:1385294/141‑1 AACAAAAACTGGAAAATTATCGAAAGAAAAAAGGCGACATTCAACAGTTTGGAAAATTATTAAGACAAATAAAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGA < 2:427004/141‑1 ACAAACACTTGAAAATTATCGTCAGAAAAAAGGCGACATTCAACAGTTTGGAAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGAA > 1:553267/1‑141 CAAACACTTGAAAATTATCGTCAGAAAAAAGGCGACATTCAACAGTTTGGAAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGAAT < 1:197536/141‑1 CAAACACTTGAAAATTATCGTCAGAAAAAAGGCGACATTCAACAGTTTGGAAAATTATTAAGACAAATAAAAAAAAAAAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGAAT < 2:825648/141‑1 ACACTTGAAAATTATCGTCAGAAAAAAGGCGACATTCAACAGTTTGGAAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGAATTTT < 1:1252771/141‑1 CTTGTGACATGACATGTGCTATGTTCTGTTACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTACTAATTTTCAAAACTGTTGCCTGTAGCCTTTTTTCTGACGTTAATTTTCAAGTCTTTGTTC > 1:493909/1‑141 GTGACATGACATGTGCTATGTTCTGTTACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTA > 1:1484058/1‑77 GTGACATGACATGTGCTATGTTCTGTTACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTA < 2:1484058/77‑1 TGACATGACATGTGCTATGTTCTGTTACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGGTCAAAA > 2:321607/1‑141 GCTATGTTCTGTTACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCG > 1:870530/1‑89 GCTATGTTCTGTTACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCG < 2:870530/89‑1 ACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCAAAAAAGTTTTTATAATTACTGTTTATGAG < 2:1265642/141‑1 atAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATGATTTTCCAAACTGTTGAATGTCGCTTTTTTTCTGACGATATTTTTCAAGAGATTAAAAAAAAAAGTTTTTATAATTACTGTTTATGAGTCG < 2:364453/139‑1 AATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTTTTTTTTTTTTTTTCAAGTGTTTGTTTAAAAAAGTTTTTATTATTTCTGTTTTTGAGTTGAT > 2:202237/1‑141 AATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCAAAAATGTTTTTATAATTACTGTTTATGAGTCGAT > 2:620695/1‑141 TTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCAAAAAAGTTTTTATAATTACTGTTTATGAGTCGATCA > 1:554075/1‑141 TTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGATGATATTTTTCAAGTGTTTGTTTAAAAAAGTTTTTATAATTACTGTTTTTGttttgtttat > 2:1470843/1‑131 TTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCAAAAAAGTTTTTATAATTACTGTTTATGAGTCGATCAT > 2:1471040/1‑141 TTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCAAAAAAGTTTTTATAATTACTGTTTATGAGTCGATCATC > 1:1591692/1‑141 TTTTGAACAAACACTTGAAAATTATCGTCAGAAAAAAGGCGACATTCAACAGTTTGGAAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGAATTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1525342‑1525192‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaagaattttACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCAAAAAAGTTTTTATAATTACTGTTTATGAGTCGATCATC > CP000730/1525239‑1525377 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |