| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 2388283 = | 146 (1.130) | 4 (0.040) | 4/220 | NT | 3.3% | intergenic (+18/+84) | USA300HOU_2247/USA300HOU_2248 | MFS family major facilitator transporter/hypothetical protein |
| ? | CP000730 | 2388362 = | 106 (0.950) | intergenic (+97/+5) | USA300HOU_2247/USA300HOU_2248 | MFS family major facilitator transporter/hypothetical protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGTACTTCTCAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2388435‑2388283‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gattggcatgctttttaAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATAAGCTCTTTTTTATA > CP000730/2388362‑2388501 AGTACTTCTCAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTG > 1:1409580/1‑141 TCTCAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGC > 1:716715/1‑141 CTCAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCT > 1:36352/1‑141 TCAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGGAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTT < 2:1414215/141‑1 TCAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTT < 1:495688/141‑1 TCAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTT < 1:998887/141‑1 TCAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGCACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTT < 1:1540393/141‑1 CAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTT < 1:1143009/141‑1 AAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTT < 2:496245/141‑1 AAAGACAATGTAAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGAGGACAGACAAATGCTGAATACAGATTGGCATGCTTTTT > 2:11027/1‑141 AAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTT < 1:245232/141‑1 AAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAAGCAGTACAGCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTT < 2:1164861/141‑1 CTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTT > 1:430339/1‑117 CTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTT < 2:430339/117‑1 ATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTAAGTTATTAGTTAGTAACGCTTAACACTTCT > 2:865701/1‑141 ATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAG > 1:1374903/1‑141 AGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGA > 1:619500/1‑141 TACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAA > 1:127992/1‑141 agcaatcattactATGCTTTTTAAGTTTTTTGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATT < 1:938210/128‑1 GATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAA > 2:163469/1‑141 TTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATTTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATA > 2:659210/1‑141 TTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGTAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATA > 2:659466/1‑141 TTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATA > 2:556134/1‑141 TTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATA < 2:334659/141‑1 GCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATAAGC < 2:590293/141‑1 GCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTC < 2:384911/110‑1 GCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTC > 1:384911/1‑110 CATGCTTTTTTTTTTTTTTTTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCTGTTTCAGAACGCAATTTAGAAATAAGCT > 2:926151/1‑141 TGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATAAGCTCT < 1:87716/141‑1 TGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATAAGCTCT > 2:724470/1‑141 GCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATAAGCTCTT > 2:716216/1‑141 GCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATAAGCTCTT > 2:1431696/1‑141 CTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATAAGCTCTTT < 2:962951/141‑1 TTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATAAGCTCTTTTTTA > 2:784752/1‑141 TTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATAAGCTCTTTTTTA > 2:1028685/1‑141 TTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATAAGCTCTTTTTTA < 1:254626/141‑1 TTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATAAGCTCTTTTTTA < 1:651386/141‑1 TAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATAAGCTCTTTTTTAT < 2:1038351/141‑1 TAAGTTTTTAGTTTGTAACGCTTAACACTGCTATTTCTTGATGAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATAAGCTCTTTTTTAT < 1:59569/141‑1 AAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATAAGCTCTTTTTTATA > 1:98496/1‑141 AAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATAAGCTCTTTTTTATA > 2:1307941/1‑141 AGTACTTCTCAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2388435‑2388283‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gattggcatgctttttaAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATAAGCTCTTTTTTATA > CP000730/2388362‑2388501 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |