New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 2489741120 (0.930)3 (0.030) 4/230 NT 2.6% intergenic (+90/+63) USA300HOU_2350/USA300HOU_2351 hypothetical protein/hypothetical lipoprotein
?CP000730 = 2489759 120 (1.030)intergenic (+108/+45) USA300HOU_2350/USA300HOU_2351 hypothetical protein/hypothetical lipoprotein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 161 total aligned reads displayed.

AATCTATTTCACAACTTATATTGTCTAAGATGACATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAATTGAATATTTTCCATT  >  CP000730/2489605‑2489878
                                                                                                                                        |                                                                                                                                           
aaTCTATTTCACAACTTATATTGTCTAAGATGACATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTa                                                                                                                                         >  2:1643740/1‑141 (MQ=255)
   cTATTTCACAACTTATATTGTCTAAGATGACATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAAtt                                                                                                                                      <  1:1201380/141‑1 (MQ=255)
   atATTTAAAAACTTATATTGTCTAAGATGACATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTAAAAAAAAAAAAAAAACGGTAAACCCTAAtt                                                                                                                                      <  2:1408426/140‑1 (MQ=255)
     aTTTCACAACTTATATTGTCTAAGATGACATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACtctataata                                                                                                                                    <  1:475105‑M1/141‑10 (MQ=255)
          acaACTTATATTGTCTAAGATGACATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCAtatta                                                                                                                               <  1:1619725/141‑1 (MQ=255)
           caACTTATATTGTCTAAGATGACATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCAtatta‑‑t                                                                                                                            >  2:357276/1‑141 (MQ=255)
           caACTTATATTGTCTAAGATGACATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCAtatta‑‑t                                                                                                                            >  1:788466/1‑141 (MQ=255)
             aCTTATATTGTCTAAGATGACATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATACAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑Tag                                                                                                                          <  1:87516/141‑1 (MQ=255)
              cTTATATTGTCTAAGATGACATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑Taga                                                                                                                         >  2:868358/1‑141 (MQ=255)
                 atatTGTCTAAGATGACATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAgtt                                                                                                                      <  2:944300‑M2/141‑4 (MQ=255)
                  tatTGTCTAAGATGACATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAgttt                                                                                                                     <  2:1332587‑M2/141‑5 (MQ=255)
                    ttGTCTAAGATGACATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAgtttac                                                                                                                   <  1:152937‑M2/141‑7 (MQ=255)
                    ttGTCTAAGATGACATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAgtttac                                                                                                                   <  2:81635‑M2/141‑7 (MQ=255)
                      gTCTAAGATGACATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAgtttaccg                                                                                                                 >  1:531905‑M2/1‑133 (MQ=255)
                      gTCTAAGATGACATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAgtttaccg                                                                                                                 <  1:1010554‑M2/141‑9 (MQ=255)
                      gTCTAAGATGACATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAgtttaccg                                                                                                                 >  1:170682‑M2/1‑133 (MQ=255)
                       tCTAAGATGACATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAgtttaccgt                                                                                                                <  1:1595803‑M2/141‑10 (MQ=255)
                          aaGATGACATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAgtttaccgtttt                                                                                                             >  1:621291‑M2/1‑129 (MQ=255)
                          aaGATGACATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGCGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAgtttaccgtttt                                                                                                             >  1:1302268‑M2/1‑129 (MQ=255)
                             aTGACATCTAATCAATAGTGTTTAAATTTCTCAGGGGCGGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACTCTAATGCATATTA‑‑GAGAggttaccgggttatt                                                                                                          <  2:831031‑M2/141‑16 (MQ=255)
                             aTGAAATCTAAACAATAGTGTATAAATTTCTCAGTGGCTGTGAATGACGTTTAAAAGTACTATAAAACGTAAACTTTTATAATTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTAtt                                                                                                          <  2:1126412/141‑1 (MQ=255)
                             aTGAAATATAATCAATAATGTTTAAATTTCTAAGTTCCTATGAATGAGATTTAAAAGTACTATAAAACGTAAACATTGATACATTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTAtt                                                                                                          <  2:769797/141‑1 (MQ=255)
                              tGACATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAATCCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTAttt                                                                                                         >  2:124274/1‑141 (MQ=255)
                               gACATCTAATCAATAGTGTATAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACTCTA‑‑TAATATGAATTAGGgtttaccgttttttgcg                                                                                                        >  2:841184‑M2/1‑124 (MQ=255)
                                aCATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTAttttt                                                                                                       <  2:1010554/141‑1 (MQ=255)
                                 cATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTAtttttt                                                                                                      >  2:1632848/1‑141 (MQ=255)
                                  aTCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTa                                                                                                     <  1:1380265/141‑1 (MQ=255)
                                   tCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACTCTA‑‑TAATATGAATTAGGgtttaccgttttttgcgt                                                                                                       <  2:1089594‑M2/138‑19 (MQ=255)
                                   tCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACTCTA‑‑TAATATGAATTAGGgtttaccgttttttgcgt                                                                                                       >  1:1089594‑M2/1‑120 (MQ=255)
                                     tAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACt                                                                                                  <  1:1021188/141‑1 (MQ=255)
                                     tAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACt                                                                                                  <  1:1523165/141‑1 (MQ=255)
                                     aaaTCAATAGTATTTAAATTTCTCAGTTGCTTTTAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTAAAAATTCTCAATAAACGGTGATCCCTAATTCATATTA‑‑TACAGTTTACCGTTGTATTTTTTAAcg                                                                                                  <  2:73333/140‑2 (MQ=255)
                                          aaTAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGcat                                                                                             <  1:1275151/141‑1 (MQ=255)
                                           aTAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGcatc                                                                                            >  1:1235448/1‑141 (MQ=255)
                                            tAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGcatca                                                                                           <  1:1111191/141‑1 (MQ=255)
                                             aGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGcatcat                                                                                          <  1:431448/141‑1 (MQ=255)
                                              gtgtTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATa                                                                                         <  1:417539/141‑1 (MQ=255)
                                                 tttAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGtt                                                                                      >  1:1226780/1‑141 (MQ=255)
                                                   tAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTtat                                                                                    <  1:981967/141‑1 (MQ=255)
                                                   tAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTAACGTTTTATTTTTTAACTTGCATCATAGTtat                                                                                    >  2:1157652/1‑141 (MQ=255)
                                                    aaaTTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTtata                                                                                   <  1:1363034/141‑1 (MQ=255)
                                                        ttCTCAGTGGGTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTaa                                                                               <  1:1297362/141‑1 (MQ=255)
                                                        ttCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACAAAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTaa                                                                               <  2:1255249/141‑1 (MQ=255)
                                                        ttCTCAGTCGCTGTGAATGAGGTTTAAAAGTACTGTAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTaa                                                                               <  1:1534434/141‑1 (MQ=255)
                                                         tctcAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGcatcaatgttaatataac                                                                              <  1:408368/141‑14 (MQ=255)
                                                             aGTGGCTGTGAATGAGGNTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACatta                                                                          >  1:1039540/1‑141 (MQ=255)
                                                               tGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACattatt                                                                        >  2:1572267/1‑141 (MQ=255)
                                                                ggCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGAAAAAAACGGTAAACACTAATTCATATTA‑‑TAGAGCTTACCGTATTATTCTTTAACTTGCATCATAGTTATATTAATATTAttg                                                                       >  1:493553/1‑141 (MQ=255)
                                                                ggCTGTGAATGAGGTATAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTAttg                                                                       <  1:1075025/141‑1 (MQ=255)
                                                                    gtgAATGAGGTTTAAAAGTACTATAATACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTgg                                                                   <  2:1436701/141‑1 (MQ=255)
                                                                    gtgAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTgg                                                                   <  1:1299116/141‑1 (MQ=255)
                                                                     tgAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGt                                                                  >  2:1514367/1‑141 (MQ=255)
                                                                     tgAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGt                                                                  >  1:36466/1‑141 (MQ=255)
                                                                     tgAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGt                                                                  <  1:304915/141‑1 (MQ=255)
                                                                        aTGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTTTTTTTTATTATAGTTATATTAACATTATTGTTAGTCGt                                                               >  2:388433/1‑141 (MQ=255)
                                                                        aTGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGt                                                               >  2:401177/1‑141 (MQ=255)
                                                                          gAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTCACATTATTGTTGGTAGttt                                                             >  2:684979/1‑141 (MQ=255)
                                                                            ggTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTgg                                                           >  1:1316685/1‑141 (MQ=255)
                                                                                  aaaGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGt                                                     <  1:81635/141‑1 (MQ=255)
                                                                                  aaaGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGt                                                     >  2:874465/1‑141 (MQ=255)
                                                                                    aGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTaa                                                   <  2:788466/141‑1 (MQ=255)
                                                                                    aGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTaa                                                   <  2:1220405/141‑1 (MQ=255)
                                                                                    aGTAATATAAAACGTAAACTTTGATACTTTAAAATACGAAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTaa                                                   <  2:1219926/141‑1 (MQ=255)
                                                                                         tataAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCAtt                                              >  1:19602/1‑141 (MQ=255)
                                                                                           taAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTATGGTTTTATTTTTTAACTGGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGc                                            >  1:156767/1‑141 (MQ=255)
                                                                                            aaaaCGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCt                                           <  1:1632848/141‑1 (MQ=255)
                                                                                            aaaaCGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCt                                           <  1:868358/141‑1 (MQ=255)
                                                                                               aCGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTC‑‑TAGTGTTTACCGTTTTATTTTTTATCTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGt                                        <  1:66805/141‑1 (MQ=255)
                                                                                                   aaaCTTTGATACTTTAAAATACGCAAAAATCTGTAATCCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTTTTGTTAGTTTGGATCAGTAACCATGGCTTGGCCAg                                    <  2:498288/141‑1 (MQ=255)
                                                                                                    aaCTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGt                                   >  1:515242/1‑141 (MQ=255)
                                                                                                     aCTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGta                                  >  2:1064818/1‑141 (MQ=255)
                                                                                                       tttGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGtata                                <  1:717382/141‑1 (MQ=255)
                                                                                                           aTACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCa                            >  1:192689/1‑141 (MQ=255)
                                                                                                             aCTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAAc                          >  2:1307964/1‑141 (MQ=255)
                                                                                                              cTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAAcc                         >  2:525131/1‑141 (MQ=255)
                                                                                                                   aaaTACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGTTCAGTAACTATTGCTTGTCCAGTATAATCAACCGttcc                    >  2:1316142/1‑139 (MQ=255)
                                                                                                                   aaaTACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTATCCAGTATAATCAACCGATAc                    >  1:61510/1‑141 (MQ=255)
                                                                                                                      tACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAAt                 <  2:1128705/141‑1 (MQ=255)
                                                                                                                      tACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAAt                 <  2:152937/141‑1 (MQ=255)
                                                                                                                       aCGCAAAAAACGGTAAACcctaattcatattatagagtttaccgttttttgcgtattttaaagtatcaaagtttacgttttatagtacttttaaacctcattcacagccactgagaaatttaaacactattgattaga                     <  2:1089594‑M1/138‑121 (MQ=255)
                                                                                                                        cGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTTCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTATCCATTGCTTGTCCAGTATAATCAACCGTTACAATTg               >  2:1453451/1‑141 (MQ=255)
                                                                                                                        cGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAATTg               >  1:777298/1‑141 (MQ=255)
                                                                                                                        cGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAATTg               >  1:1274789/1‑141 (MQ=255)
                                                                                                                          aataacccggtaacctctctaatatgcattagagtttaccgttttttgcgtattttaaagtatcaaagtttacgttttatagtacttttaaacctcattcaccgcccctgagaaatttaaacactattgattagatgtcat               <  2:831031‑M1/134‑127 (MQ=255)
                                                                                                                           aaaaaaCGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAATTGAat            <  2:495527/141‑1 (MQ=255)
                                                                                                                           aaaaaaCGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAATTGAat            <  2:22495/141‑1 (MQ=255)
                                                                                                                            aaaaaCGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAATTGAata           >  1:285796/1‑141 (MQ=255)
                                                                                                                              aaaCGGTAAACtctataatatgaattagggtttaccgttttttgcgtattttaaagtatcaaagtttacgttttatagtacttttaaacctcattcacagccactgagaaatttaaacactattgattagatgtcattatg           <  2:1263006‑M1/141‑131 (MQ=255)
                                                                                                                               aaCGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAATTGAATAttt        >  2:683155/1‑141 (MQ=255)
                                                                                                                                aCGGTAAACtctataatatgaattagggtttaccgttttttgcgtattttaaagtatcaaagtttacgttttatagtacttttaaacctcattcacagccactgagaaatttaaacactattgattagatgtcatcttaga         <  1:1595803‑M1/141‑133 (MQ=255)
                                                                                                                                aCGGTAAACtctataatatgaattagggtttaccgttttttgcgtattttaaagtatcaaagtttacgttttatagtacttttaaacctcattcacagccactgagaaatttaaacactattgattagatgtcatattaga         >  2:1480881‑M1/1‑9 (MQ=255)
                                                                                                                                 cGGTAAACtctataatatgaattagggtttaccgttttttgcgtattttaaagtatcaaagtttacgttttatagtacttttaaacctcattcacagccactgagaaatttaaacactattgattagatgtcatcttagac        >  1:531905‑M1/1‑8 (MQ=255)
                                                                                                                                 cGGTAAACtctataatatgaattagggtttaccgttttttgcgtattttaaagtatcaaagtttacgttttatagtacttttaaacctcattcacagccactgagaaatttaaacactattgattagatgtcatcttagac        <  1:1010554‑M1/141‑134 (MQ=255)
                                                                                                                                  ggTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAATTGCATATTTTcc     >  1:1471166/1‑141 (MQ=255)
                                                                                                                                   gTAAACtctataatatgaattagggtttaccgttttttgcgtattttaaagtatcaaagtttacgttttatagtacttttaaacctcattcacagccactgagaaatttaaacactattgattagatgtcatcttagacaa      <  2:81635‑M1/141‑136 (MQ=255)
                                                                                                                                   gTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAATTGAATATTTTCca    >  1:601143/1‑141 (MQ=255)
                                                                                                                                   gTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAATTGAATATTTTCca    <  2:144607/141‑1 (MQ=255)
                                                                                                                                    tAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAATTGAATATTTTCcat   >  2:289226/1‑141 (MQ=255)
                                                                                                                                     aaaCCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAATTGAATATTTTCcatt  <  1:357276/141‑1 (MQ=255)
                                                                                                                                     aaaCCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAATTGAATATTTTCcatt  <  1:331341/141‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                           
AATCTATTTCACAACTTATATTGTCTAAGATGACATCTAATCAATAGTGTTTAAATTTCTCAGTGGCTGTGAATGAGGTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTA‑‑TAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACAATTGAATATTTTCCATT  >  CP000730/2489605‑2489878

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.