| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 1066493 | 35 (0.640) | 3 (0.060) | 3/238 | NT | 7.6% | intergenic (+361/+176) | fmt1/qoxD | S12 family carboxypeptidase/possible cytochrome c oxidase subunit IV |
| ? | CP000730 | = 1066509 | 40 (0.780) | intergenic (+377/+160) | fmt1/qoxD | S12 family carboxypeptidase/possible cytochrome c oxidase subunit IV | |||||
TGCGTGGTGTGAATGTTTTCTAAATCTAACTGGAAATGATAATTTAATAATGTACACTTTTGATTGTTTAAACATGTACAATTTTTAAAAACCTAGGGATAATTTTATTGACGTGAACAACATTGAGATTATCTTTAGACATAAATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1066346‑1066493‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataaatatAGTAACTTCAAAATCCATATTTATGTCTAAAGATAATCTCAATGTTGTTCACGTCAATAAAATTATCCCTAGGTTTTTAAAAATTGTACATGTTTAAACAATCAAAAGTGTACATTATTAAATTATCATTTCCAGTTAGA < CP000730/1066509‑1066370 TGCGTTGTGGGAATGTTTTCCAAATCTAACTGGAAATGATAATTTAATAATGTACACTTTTGATTGTTTAAACATGTACAATATTTAAAAACCTAGGGATAATTTTATTGACGTGAACAACATTGGCATTATCTTTAGACA < 2:356464/141‑1TGCGTGGTGTGAATGTTTTCTAAATCTAACTGGAAATGATAATTTAATAATGTACACTTTTGATTGTTTAAACATGTACAATTTTTAAAAACCTAGGGATAATTTTATTGACGTGAACAACATTGAGATTATCTTTAGACA > 1:61639/1‑141TGCGTGGTGTGAATGTNTTCTAAATCTAANTGGAAATGATAATTTAATAATGTACACTTTTGATTGTTTAAACATGTACAATTTTTAAAAACCTAGGGATAATTTTATTGACGTGAACAACATTGAGATTATCTTTAGACA > 1:413953/1‑141 TGGTGTGAATGTTTTCTAAATCTAACTGGAAATGATAATTTAATAATGTACACTTTTGATTGTTTAAACATGTACAATTTTTAAAAACCTAGGGATAATTTTATTGACGTGAACAACATTGAGATTATCTTTAGACATAAA > 2:522050/1‑141 TGATAATTTAATAATGTACACTTTTGATTGTTTAAACATGTACAATTTTTAAAAACCTAGGGATAATTTTATTGACGTGAACAACATTGAGATTATCTTTAGACATAAATATAGTAACTTCAAAATCCATATTTATGTCTA < 2:191895/141‑1 ATAATGTACACTTTTGATTGTTTAAACATGTACAATTTTTAAAAACCTAGGGATAATTTTATTGACGTGAACAACATTGAGATTATCTTTAGACATAAATATAGTAACTTCAAAATCCATATTTATGTCTAAAGAT > 1:509734/1‑136 ATAATGTACACTTTTGATTGTTTAAACATGTACAATTTTTAAAAACCTAGGGATAATTTTATTGACGTGAACAACATTGAGATTATCTTTAGACATAAATATAGTAACTTCAAAATCCATATTTATGTCTAAAGAT < 2:509734/136‑1 TAAATATAGTAACTTCAAAATCCATATTTATGTCTAAAGATAATCTCAATGTTGTTCACGTCAATAAAATTATCCCTAGGTTTTTAAAAATTGTACATGTTTAAACAATCAAAAGTGTACATTATTAAATTATCATTTCCA > 2:474371/1‑141 TAAAAATAGTAACTTCAAAATACATATTTATGTCTAAAGATAATCTCAATGTTGTTCACGTCAATAAAATTATCCCTAGGTTTTTAAAAATTGTACATGTTTAAACAATCAAAAGTGTACATTATTAAATTATCATTTCCA < 2:83975/141‑1 AAATATAGTAACTTCAAAATCCATATTTATGTCTAAAGATAATCTCAATGTTGTTCACGTCAATAAAATTATCCCTAGGTTTTTAAAAATTGTACATGTTTAAACAATCAAAAGTGTACATTATTAAATTATCATTTCCAG > 2:661851/1‑141 AAATATAGTAACTTCAAAATCCATATTTATGTCTAAAGATAATCTCAATGTTGTTCACGTCAATAAAATTATCCCTAGGTTTTTAAAAATTGTACATGTTTAAACAATCAAAAGTGTACATTATTAAATTATCATTTCCAG > 1:358073/1‑141 TATAGTAACTTCAAAATCCATATTTATGTCTAAAGATAATCTCAATGTTGTTCACGTCAATAAAATTATCCCTAGGTTTTTAAAAATTGTACATGTTTAAACAATCAAAAGTGTACATTATTAAATTATCATTTCCAGTTA < 1:507107/141‑1 TAGTAACTTCAAAATCCATATTTATGTCTAAAGATAATCTCAATGTTGTTCACGTCAATAAAATCATCCCTAGGTTTTTAAAAATTGTACATTATTAAACAATCAAAAGTGTACATAATTAAATTATCATTTCCAGTTAGA > 1:672873/1‑141 TGCGTGGTGTGAATGTTTTCTAAATCTAACTGGAAATGATAATTTAATAATGTACACTTTTGATTGTTTAAACATGTACAATTTTTAAAAACCTAGGGATAATTTTATTGACGTGAACAACATTGAGATTATCTTTAGACATAAATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1066346‑1066493‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataaatatAGTAACTTCAAAATCCATATTTATGTCTAAAGATAATCTCAATGTTGTTCACGTCAATAAAATTATCCCTAGGTTTTTAAAAATTGTACATGTTTAAACAATCAAAAGTGTACATTATTAAATTATCATTTCCAGTTAGA < CP000730/1066509‑1066370 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |