| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 1805304 = | 43 (0.780) | 4 (0.080) | 4/238 | NT | 9.2% | intergenic (+2276/+49) | cycA/pykA | APC family amino acid‑polyamine‑organocation transporter/pyruvate kinase |
| ? | CP000730 | 1805347 = | 39 (0.760) | intergenic (+2319/+6) | cycA/pykA | APC family amino acid‑polyamine‑organocation transporter/pyruvate kinase | |||||
GGTGTAGAAAAAGCTGTTAAAAACATAAGCAATAACATGTTAGTTACGATTGATGCTGCTCAAGGTAAAATCTTTGAAGGATATGCAAACGTACTATAATTTATAAAAAAACGTCTTTCCATTTATCAACAATGGAAAGGCGTTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1805451‑1805304‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttttttTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGCTTATGTTTTTAACAGCTTTTTCTACACCTACAACTGTTGGAATACCTTTTTCTAAACCA > CP000730/1805347‑1805482 GGTGTAGAAAAAGCTGTTAAAAACATAAGCAATAACATGTTAGTTACGATTGATGCTGCTCAAGGTAAAATCTTTGAAGGATATGCAAACGTACTATAATTTATAAAAAAACGTCTTTCCATTTATCAACAATGGAAAGGC > 1:350103/1‑141 GTGTAGAAAAAGCTGTTAAAAACATAAGCAATAACATGTTAGTTACGATTGATGCTGCTCAAGGTAAAATCTTTGAAGGATATGCAAACGTACTATAATTTATAAAAAAACGTCTTTCCATTTATCAACAATGGAAAGGCG < 1:122286/141‑1 GTAGAAAAAGCTGTTAAAAACATAAGCAATAACATGTTAGTTACGACTGATGCTGCTCAAGGTAAAATCTTTGAAGGATATGCAAACGTACTATAATTTATAAAAAAACGTCTTTCCATTTATCAACAATGGAAAGGCGTT > 1:587228/1‑141 GAAAAAGCTGTTAAAAACATAAGCAATAACATGTTAGTTACGATTGATGCTGCTCAAGGTAAAATCTTTGAAGGATATGCAAACGTACTATAATTTATAAAAAAACGTCTTTCCATTTATCAACAATGGAAAGGCGTTTTT < 1:188331/141‑1 GAAAAAGCCTGTAATAACCTAAGCCATAACATGTTATTTACGATTGATGCTGCTCAAGTTAATATCTTTGAAGGATATGCAAACGTACTATAATTTATCAAAATACGTCTTTCCATTTATCAACTATGTAAAGGCGTTTTT < 2:661807/141‑1 GTTACGATTGATGCTGCTCAAGGTAAAATCTTTGAAGGATATGCAAACGTACTATAATTTATAAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGA < 1:287130/141‑1 GTCTTTCCATTTATCAACAATGGAAAGGCGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAA < 1:58733/68‑1 GTCTTTCCATTTATCAACAATGGAAAGGCGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAA > 2:58733/1‑68 TTTCCATTTATCAACAATGGAAAGGCGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGCTTATGTTTTTAACAGCTTTTTCTACACCTAC > 1:198549/1‑141 GTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGCTTATGTTTTTAACAGCTTTTTCTACACCTACAACTGTTGGAATACCTTTTTCTAAAC < 1:552243/141‑1 TTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGCTTATGTTTTTAACAGCTTTTTCTACACCTACAACTGTTGGAATACCTTTTTCTAAACCA > 2:143506/1‑141 GGTGTAGAAAAAGCTGTTAAAAACATAAGCAATAACATGTTAGTTACGATTGATGCTGCTCAAGGTAAAATCTTTGAAGGATATGCAAACGTACTATAATTTATAAAAAAACGTCTTTCCATTTATCAACAATGGAAAGGCGTTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1805451‑1805304‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttttttTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGCTTATGTTTTTAACAGCTTTTTCTACACCTACAACTGTTGGAATACCTTTTTCTAAACCA > CP000730/1805347‑1805482 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |