New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	512620 =	6 (0.770)	11 (2.080) +TTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAAAAAAC	11/190	0.0	59.7%	intergenic (+688/‑173)	recR/rrs1	recombination protein RecR/16S ribosomal RNA
	?	CP000730	2176447 =	16 (2.040)					noncoding (114/114 nt)	rrf5	5S ribosomal RNA

TACATTTCTCGTTTCGTCAGATTCAAACGTTTTCACTTCGCCAAGCCATCTTTCTTTGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAAATTA  >  CP000730/2176311‑2176579                                                                                                                                         |                                                                                                                                     tgacatattgtcattcagttttcaatgttcatttttcttaccgacaagaattaattatacattttatcaacatttaagtcaataactttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCt                                                                                                                                  <  2:30710‑M2/5‑1 (MQ=255)       tctcGTTTCGTCAGATTCAAACGTTTTCACTTCGCCAAGCCATCTTTCTTTGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAAc                                                                                                                            >  1:85513/1‑141 (MQ=40)        ttgtcattctgttttcaatgttcatttttcttaccgacatgaattaattatacattttctcaacatttaagtcaataactttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACg                                                                                                                           <  1:41086‑M2/12‑1 (MQ=255)            tttCGTCAGATTCAAACGTTTTCACTTCGCCAAGCCATCTTTCTTTGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCt                                                                                                                       >  2:33904/1‑141 (MQ=39)                             gTTTTCACTTCGCCAAGCCATCTTTCTTTGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTaa                                                                                                      <  1:34107/141‑1 (MQ=40)                              catttttcttaccgacaagaattaattatacattttatcaacatttaagtcaataactttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAg                                                                                                     >  1:57049‑M2/108‑141 (MQ=255)                                ttCACTTCGCCAAGCCATCTTTCTTTGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGCACGTAAGtt                                                                                                   >  1:22247/1‑141 (MQ=255)                                       taccgacaagaattaattatacattttaccaacatttaagtcaataactttttttatcgtgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTAc                                                                                            <  1:25363‑M2/43‑1 (MQ=255)                                        gCCAAGCCATCTTTCTTTGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTAcc                                                                                           <  1:29223/141‑1 (MQ=39)                                        accgacaagaattaattatacattttatcaacatttaagtcaataactttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTAcc                                                                                           >  2:1692‑M2/98‑141 (MQ=255)                                                aTCTTTCTTTGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGc                                                                                   <  2:17093/141‑1 (MQ=39)                                                   ttaattatacattttatcaacatttaagtcaataactttttttatcttgtccattttattttttaaccaaaaaaaaaaaaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTaa                                                                                <  2:80846‑M2/55‑1 (MQ=255)                                                    ttctttGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAg                                                                               >  1:83632/1‑141 (MQ=37)                                                       ttatacattttatcaacatttaagtcaataactttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAg                                                                            <  1:47888‑M2/59‑1 (MQ=255)                                                          gtgtTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCtt                                                                         <  2:69931/141‑1 (MQ=37)                                                                 taacaactattaagtcaataactttttttatcttgttcattttagtttgtaaccaaagtttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCCAAGGAGCTTAACTTCt                                                                  <  2:62664‑M2/69‑1 (MQ=255)                                                                 cTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGAAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCt                                                                  <  1:46046/141‑1 (MQ=18)                                                                       catttaagtcaataactttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTc                                                            >  1:16416‑M2/67‑141 (MQ=255)                                                                             agtcaataactttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATg                                                      <  1:9987‑M2/81‑1 (MQ=255)                                                                                          ttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGa                                         <  2:28835‑M2/94‑1 (MQ=255)                                                                                                     cTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCta                              <  2:85513/141‑1 (MQ=32)                                                                                                     cTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCta                              <  1:84753/141‑1 (MQ=32)                                                                                                        gCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTGTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAg                           <  2:74819/141‑1 (MQ=17)                                                                                                         cGGTCTCAATGCGGCTCATCGCATCCACTTTTTTTTTTTTTTTTTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAACGAGCTTCACTTCTGTCTTCGGCATGGGCACAGGTGTGACCTCCTTGCTATAGt                          >  2:349/1‑141 (MQ=11)                                                                                                          ttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTc                         <  2:57049‑M2/110‑1 (MQ=255)                                                                                                                           tCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGt        >  1:57047/1‑141 (MQ=32)                                                                                                                            cGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCGTTGTGCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTa       >  1:73571/1‑141 (MQ=12)                                                                                                                                 ccACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAAATta  <  2:83632/141‑1 (MQ=35)                                                                                                                                         |                                                                                                                                     TACATTTCTCGTTTCGTCAGATTCAAACGTTTTCACTTCGCCAAGCCATCTTTCTTTGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAAATTA  >  CP000730/2176311‑2176579

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.