| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 1955657 | 64 (0.910) | 4 (0.060) | 4/248 | 9.9 | 6.5% | intergenic (‑502/+411) | USA300HOU_1816/lukD | hypothetical protein/leukotoxin LukD |
| ? | CP000730 | = 1955663 | 56 (0.860) | intergenic (‑508/+405) | USA300HOU_1816/lukD | hypothetical protein/leukotoxin LukD | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACAACTAAAAGTATAACTTTCCATCACCAAAGTCAGAATTTATTGAAACACTCAACTGATAATATAGAAGGCTAATTATAAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1955507‑1955657‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaatagagccTGAAAGGGCTCTATTTGTCTTTTTAAATATATTAAGTGCTAAAAAACGGAAACAGTTTATTAATCGCCAGGTATTTTTATAATTAGCCTTCTATATTATCAGTTGAGTGTTTCAATAAATTCTGACTTTGGTGATGGAAA < CP000730/1955663‑1955524 ACAACTAAAAGTATAACTTTCCATCACCAACGTCAGAATTTATTGAAACACTCAACTGATAATATAGAAGGCTAATTATAAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGAC > 1:44879/1‑141 AAGTATAACTTTCCATCACCAAAGTCAGAATTTATTGAAACACTCAACTGATAATATAGAAGGCTAATTATAAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAG > 2:48786/1‑141 AAGTATAACTTTCCATCACCAAAGTCAGAATTTATTGAAACACTCAACTGATAATATAGAAGGCTAATTATAAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAG < 2:733849/141‑1 AGTATAACTTTCCATCACCAAAGTCAGAATTTATTGAAACACTCAACTGATAATATAGAAGGCTAATTATAAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGC > 1:363854/1‑141 CTTTCCATCACCAAAGTCAGAATTTATTGAAACACTCAACTGATAATATAGAAGGCTAATTATAAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATAATTAAAAAGACAAATAGAGatatagtg > 1:376976/1‑133 CACCAAAGTCAGAATTTATTGAAACACTCAACTGATAATATAGAAGGCTAATTATAAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCTGAAAGGGCTCTAT < 2:150689/141‑1 ACTCAACTGATAATATAGAAGGCTAATTATAAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCTGAAAGGGCTCTATTTGTCTTTTTAAATATATTAAGTGC < 1:777887/141‑1 GAAGGCTAATTATAAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCTGAAAGGGCTCTATTTGTCTTTTTAA > 1:521877/1‑111 GAAGGCTAATTATAAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCTGAAAGGGCTCTATTTGTCTTTTTAA < 2:521877/111‑1 AAATAGAGCCTGAAAGGGCTCTATTTGTCTTTTTAAATATATTAAGTGCTAAAAAACGGAAACAGTTTATTAATCGCCAGGTATTTTTATAATTAGCCTTCTATATTATCAGTTGAGTGTTTCAATAAATTCTGACTTTGG < 2:61039/141‑1 AAATAGAGCCTGAAAGGGCTCTATTTGTCTTTTTAAATATATTAAGTGCTAAAAAACGGAAACAGTTTATTAATCGCCAGGTATTTTTATAATTAGCCTTCTATATTATCAGTTGAGTGTTTCAATAAATTCTGACTTTGG < 2:61024/141‑1 AGAGCCTGAAAGGGCTCTATTTGTCTTTTTAAATATATTAAGTG < 2:773523/44‑1 AGAGCCTGAAAGGGCTCTATTTGTCTTTTTAAATATATTAAGTG > 1:773523/1‑44 CTGAAAGGGCTCTATTTGTCTTTTTAAATAGATTAAGTGCTAAAAAACGGAAACAGTTTATTAATCGCCAGGTATTTTTATAATTAGCCTTCTATATTATCAGTTGAGTGTTTCAATAAATTCTGACTATGGTGATGGAAA > 2:327962/1‑141 ACAACTAAAAGTATAACTTTCCATCACCAAAGTCAGAATTTATTGAAACACTCAACTGATAATATAGAAGGCTAATTATAAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1955507‑1955657‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaatagagccTGAAAGGGCTCTATTTGTCTTTTTAAATATATTAAGTGCTAAAAAACGGAAACAGTTTATTAATCGCCAGGTATTTTTATAATTAGCCTTCTATATTATCAGTTGAGTGTTTCAATAAATTCTGACTTTGGTGATGGAAA < CP000730/1955663‑1955524 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |