New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP000730 | 431138 = | 63 (0.890) | 5 (0.080) | 5/250 | 9.3 | 7.6% | intergenic (+16/+65) | nfrA/tcyP | possible FMN reductase/possible DAACS family dicarboxylate/amino acid:sodium (Na+) or proton (H+) symporter |
? | CP000730 | 431188 = | 63 (0.960) | intergenic (+66/+15) | nfrA/tcyP | possible FMN reductase/possible DAACS family dicarboxylate/amino acid:sodium (Na+) or proton (H+) symporter | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
CGTACAAACGGGAATCGCAAAGAAACATGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGTTTAGTTAACTTGGCGGTA > CP000730/431006‑431278 | cGTACAAACGGGAATCGCAAAGAAACATGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGcccc > 2:182596/1‑141 (MQ=255) gTACAAACGGGAATCGCAAAGAAACATGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGccccc > 1:503927/1‑141 (MQ=255) tACAAACGGGAATCGCAAAGAAACATGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGcccccc > 2:281388/1‑141 (MQ=255) tACAAACGGGAATCGCAAAGAAACATGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGcccccc > 2:378069/1‑141 (MQ=255) tACAAACGGCAATCGCAAAGAAACATGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGcccccc > 1:743185/1‑141 (MQ=255) aaaCGGGAATCGCAAAGAAACATGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCctct > 2:186339/1‑141 (MQ=255) aaaCGGGAATCGCAAAGAAACATGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAAGCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCctct < 1:474302/141‑1 (MQ=255) aaCGGGAATCGCAAAGAAACATGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTa < 1:256438/141‑1 (MQ=255) gAATCGCAAAGAAACATGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTa < 1:427417/141‑1 (MQ=255) tCGCAAAGAAACATGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTaaaa > 1:650189/1‑141 (MQ=255) cGCAAAGAAACATGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAAt > 1:509391/1‑141 (MQ=255) aCATGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGtat > 1:623087/1‑141 (MQ=255) aCATGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGtat < 1:479565/141‑1 (MQ=255) aTGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAg > 1:304218/1‑141 (MQ=255) tGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCATGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGc > 2:558370/1‑141 (MQ=255) gTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTa < 1:284276/141‑1 (MQ=255) gcaAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAgggg > 1:237065/1‑141 (MQ=255) aaTTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCg < 1:363335/141‑1 (MQ=255) aTTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCgg < 1:519040/141‑1 (MQ=255) aTTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCgg < 2:743185/141‑1 (MQ=255) tGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGt > 2:93012/1‑141 (MQ=255) gTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAGATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGTGGGGGCGGGTATTTCt < 2:766610/141‑1 (MQ=255) tCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTg > 1:554662/1‑141 (MQ=255) ccTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGc < 1:695266/141‑1 (MQ=255) ccTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAAGGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGc < 2:820765/141‑1 (MQ=255) tAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCaa < 1:416871/141‑1 (MQ=255) aaCAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAAt > 2:774577/1‑141 (MQ=255) aaaGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAg > 1:748005/1‑141 (MQ=255) aGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAgtg < 2:299730/141‑1 (MQ=255) cAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGtgtg > 2:374722/1‑141 (MQ=255) cAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGtgtg < 2:503927/141‑1 (MQ=255) cAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGtgtg > 1:67666/1‑141 (MQ=255) aTTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGt < 2:499447/141‑1 (MQ=255) tAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTa > 2:358447/1‑141 (MQ=255) gATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAAt < 1:685868/141‑1 (MQ=255) gATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAAt > 1:59301/1‑141 (MQ=255) atatGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATg < 1:689899/141‑1 (MQ=255) gTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATgcagc < 1:596664/141‑1 (MQ=255) aTTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCAtt < 2:498149/141‑1 (MQ=255) aTTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCAtt < 1:18374/141‑1 (MQ=255) ttGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCAttt < 1:680505/141‑1 (MQ=255) ttGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCAttt < 1:281388/141‑1 (MQ=255) ttGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCAttt > 1:658804/1‑141 (MQ=255) aaaaaTCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAAt < 2:281070/141‑1 (MQ=255) aaaaaTCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAAt > 1:595844/1‑141 (MQ=255) aaaaaTCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTATAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAAt > 1:429709/1‑141 (MQ=255) aaaaTCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATc > 2:110433/1‑141 (MQ=255) aGGCTTAATACAGCGATAGCAAGATGCCAAAATAGCCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGt < 1:48808/141‑1 (MQ=255) gCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAATGATGGCTATAGGGGGCGGTTATGTCTGGCAATGAATGAGTGTGAAGGTAATGCAGCATTATCATTTGAATCGAAAGTAt > 1:212037/1‑141 (MQ=255) tAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCACTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCtt < 1:333183/141‑1 (MQ=255) cGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCaa < 2:816098/141‑1 (MQ=255) cGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCaa < 2:317895/141‑1 (MQ=255) gCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGttt < 1:474067/141‑1 (MQ=255) gCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGttt < 1:474055/141‑1 (MQ=255) aaGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGTTTAg > 2:681878/1‑141 (MQ=255) aaGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAACTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGTTTAg < 1:664184/141‑1 (MQ=255) gATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGTTTAGtt < 1:231506/141‑1 (MQ=255) ccAAAATAACCCGCCCCCCGCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGATATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGTTTAGTTAACt < 2:803579/141‑1 (MQ=255) ctgaaTAACCCTCCCCCCGCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAGTGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGTTTAGTTAACtt < 2:384748/138‑1 (MQ=255) aaaaTAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCTCAATGTTTAGTTAACTTg > 2:209323/1‑141 (MQ=255) aaaaTAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGTTTAGTTAACTTg > 1:442426/1‑141 (MQ=255) aaaTAACCCGCCCCCATCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGTTTAGTTAACTTgg > 1:122333/1‑141 (MQ=255) aaCCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGTTTAGTTAACTTGGCGGt > 2:743887/1‑141 (MQ=255) aCCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGTTTAGTTAACTTGGCGGTa > 2:107844/1‑141 (MQ=255) | CGTACAAACGGGAATCGCAAAGAAACATGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGTTTAGTTAACTTGGCGGTA > CP000730/431006‑431278 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |