| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 197371 = | 106 (0.970) | 10 (0.100) | 10/254 | 11.9 | 9.0% | coding (396/975 nt) | USA300HOU_0186 | possible ABC superfamily ATP‑binding cassette transporter, binding protein |
| ? | CP000730 | = 197367 | 103 (1.000) | coding (392/975 nt) | USA300HOU_0186 | possible ABC superfamily ATP‑binding cassette transporter, binding protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATGCGGCTGGCATTTCTGCTGGCGACATTTCATGATAGCTAAAATGCCCCGGTTTAATCTTTAATTGTTTACGTAATTCCTCAAGTAAAAGATAATGTGTTGAATAACGATGTGGTATACCAAAATGGTAATCATCGCCATTATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/197516‑197371‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attattaAATTCATTTAAGTGCATACCTTTTTGTCCCATAATGACATTGCCTTCATGATGGCCCAATGCCACAGCCTTTATATTTGAGCCCTTCTGTTTTGATTTCATCGCTAGCTCTATTAAAGTTGATGCACCATCAATACGACC < CP000730/197367‑197228 ATGCGGCTGGCATTTCTGCTGGCGACATTTCATGATAGCTAAAATGCCCCGGTTTAATCTTTAATTGTTTACGTAATTCCTCAAGTAAAAGATAATGTGTTGAATAACGATGTGGTATACCAAAATGGTAATCATCGCCAT < 1:8584/141‑1 GCGGCTGGCATTTCTGCTGGCGACATTTCATGATAGCTAAAATGCCCCGGTTTAATCTTTAATTGTTTACGTAATTCCTCAAGTAAAAGATAATGTGTTGAATAACGATGTGGTATACCAAAATGGTAATCATCGCCATTA < 1:682139/141‑1 GGCTGGCATTTCTGCTGGCGACATTTCATGATAGCTAAAATGCCCCGGTTTAATCTTTAATTGTTTACGTAATTCCTCAAGTAAAAGATAATGTGTTGAATAACGATGTGGTATACCAAAATGGTAATCATCGCCATTATT > 2:10281/1‑141 GGCATTTCTGCTGGCGACATTTCATGATAGCTAAAATGCCCCGGTTTAATCTTTAATGGTTTACGTAATTCCTCAAGTAAAAGATAATGTGTTGAATAACGATGTGGTATACCAAAATGGTAATCATCGCCATTATTAAAT > 1:34214/1‑141 CATTTCTGCTGGCGACATTTCATGATAGCTAAAATGCCCCGGTTTAATCTTTAATTGTTTACGTAATTCCTCAAGTAAAAGATAATGTGTTGAATAACGATGTGGTATACCAAAATGGTAATCATCGCCATTATTAAATTC > 1:297943/1‑141 ATCTTTAATTGTTTACGTAATTCCTCAAGTAAAAGATAATGTGTTGAATAACGATGTGGTATACCAAAATGGTAATCATCGCCATTATTAAATTCATTTAAGTGCATACCTTTTTGTCCCATAATGACATTGCCTTCATGA > 1:177538/1‑141 ATCTTTAATTGTTTACGTAATTCCTCAAGTAAAAGATAACGTGTTGAATAACGATGTGGTATACCAAAATGGTAATCATCGCCATTATTAAATTCATTTAAGTGCATACCTTTTTGTCCCATAATGACATTGCCTTCATGA < 1:53423/141‑1 ATTGTTTACGTAATTCCTCAAGTAAAAGATAATGTGTTGAATAACGATGTGGTATACCAAAATGGTAATCATCGCCATTATTAAATTCATTTAAGTGCATACCTTTTTGTCCCATAATGACATTGCCTTCATGATGGCCCA > 2:338618/1‑141 ACGTAATTCCTCAAGTAAAAGATAATGTGTTGAATAACGATGTGGTATACCAAAATGGTAATCATCGCCATTATTAAATTCATTTAAGTGCATACCTTTTTGTCCCATAATGACATTGCCTTCATGATGGCCCAATGCCAC < 2:34214/141‑1 TAAAAGATAATGTGTTGAATAACGATGTGGTATACCAAAATGGTAATCATCGCCATTATTAAATTCATTTAAGTGCATACCTTTTTGTCCCATAATGACATTGCCTTCATGATGGCCCAATGCCACAGCCTTTATATTTGA < 2:297943/141‑1 TGTTGAATAACGATGTGGTATACCAAAATGGTAATCATCGCCATTATTAAATTCATTTAAGTGCATACCTTTTTGTCCCATAATGACATTGCCTTCATGATGGCCCAATGCCACAGCCTTTATATTTGAGCCCTTCTGTTT > 2:243795/1‑141 GTGGTATACCAAAATGGTAATCATCGCCATTATTAAATTCATTTAAGTGCGTACCTTTTTGTCCCATAATGACATTGCCTTCATGATGGCCCAATGCCACAGCCTTTATATTTGAGCCCTTCTGTTTTGATTTCATCGCTA < 2:99296/141‑1 ctattaccTTAAATTCATTTAAGTGCATACCTTTTTGTCCCATAATGACATTGCCTTCATGATGGCCCAATGCCACAGCCTTTATATTTGAGCCCTTCTGTTTTGATTTCATCGCTAGCTCTATTAAAGTTGATGCACCAT < 1:763456/133‑1 CGCCATTATTAAATTCATTTAAGTGCATACCTTTTTGTCCCATAATGACATTGCCTTCATGATGGCCCAATGCCACAGCCTTTATATTTGAGCCCTTCTGTTTTGATTTCATCGCTAGCTCTATTAAAGTTGATGCACCAT < 2:1004191/141‑1 TTAAATTCATTTAAGTGCATACCTTTTTGTCCCATAATGACATTGCCTTCATGATGGCCCAATGCCACAGCCTTTATATTTGAGCCCTTCTGTTTTGATTTCATCGCTAGCTCTATTAAAGTTGATGCACCATCAATACGA < 2:678827/141‑1 TTAAATTCATTTAAGTGCATACCTTTTTGTCCCATAATGACATTGCCTTCATGATGGCCCAATGCCACAGCCTTTATATTTGAGCCCTTCTGTTTTGATTTCATCGCTAGCTCTATTAAAGTTGATGCACCATCAATACGA < 1:444750/141‑1 TTAAATTCATTTAAGTGCATACCTTTTTGTCCCATAATGACATTGCCTTCATGATGGCCCAATGCCACAGCCTTTATATTTGAGCCCTTCTGTTTTGATTTCATCGCTAGCTCTATTAAAGTTGATGCACCATCAATACGA > 1:115964/1‑141 TTAAATTCATTTAAGTGCATACCTTTTTGTCCCATAATGACATTGCCTTCATGATGGCCCAATGCCACAGCCTTTATATTTGAGCCCTTCTGTTTTGATTTCATCGCTAGCTCTATAAAAGGTTATGCACCATCAATACGA < 2:352842/141‑1 TAAATTCATTTAAGTGCATACCTTTTTGTCCCATAATGACATTGCCTTCATGATGGCCCAATGCCA > 1:1074736/1‑66 TAAATTCATTTAAGTGCATACCTTTTTGTCCCATAATGACATTGCCTTCATGATGGCCCAATGCCA < 2:1074736/66‑1 AAATTCATTTAAGTGCATACCTTTTTGTCCCATAATGACATTGCCTTCATGATGGCCCAATGCCACAGCCTTTATATTTGAGCCCTTCTGTTTTGATTTCATCGCTAGCTCTATTAAAGTTGATGCACCATCAATACGACC < 1:1181611/141‑1 ATGCGGCTGGCATTTCTGCTGGCGACATTTCATGATAGCTAAAATGCCCCGGTTTAATCTTTAATTGTTTACGTAATTCCTCAAGTAAAAGATAATGTGTTGAATAACGATGTGGTATACCAAAATGGTAATCATCGCCATTATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/197516‑197371‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attattaAATTCATTTAAGTGCATACCTTTTTGTCCCATAATGACATTGCCTTCATGATGGCCCAATGCCACAGCCTTTATATTTGAGCCCTTCTGTTTTGATTTCATCGCTAGCTCTATTAAAGTTGATGCACCATCAATACGACC < CP000730/197367‑197228 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |